Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DR788_RS06055 Genome accession   NZ_CP034792
Coordinates   1178449..1178925 (-) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 2009C-3378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1173449..1183925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS06005 sbmC 1173941..1174414 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  DR788_RS06010 yeeA 1174613..1175671 (+) 1059 WP_001202488.1 FUSC family protein -
  DR788_RS06015 tmaR 1175843..1176172 (+) 330 WP_000450409.1 DUF496 family protein -
  DR788_RS06020 - 1176273..1176455 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  DR788_RS06025 - 1176509..1176655 (+) 147 Protein_1155 transposase domain-containing protein -
  DR788_RS06030 - 1176944..1177024 (-) 81 Protein_1156 hypothetical protein -
  DR788_RS06035 yeeW 1177070..1177264 (-) 195 WP_000988600.1 DUF5983 family protein -
  DR788_RS06040 cbtA 1177261..1177634 (-) 374 Protein_1158 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DR788_RS06045 cbeA 1177723..1178091 (-) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DR788_RS06050 yeeT 1178165..1178386 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  DR788_RS06055 radC 1178449..1178925 (-) 477 WP_001186192.1 RadC family protein Machinery gene
  DR788_RS06060 - 1178940..1179419 (-) 480 WP_000860080.1 antirestriction protein -
  DR788_RS06065 - 1179501..1180322 (-) 822 WP_001234544.1 DUF932 domain-containing protein -
  DR788_RS06075 - 1180543..1180953 (-) 411 WP_000846711.1 hypothetical protein -
  DR788_RS06080 - 1180969..1181652 (-) 684 WP_000775497.1 hypothetical protein -
  DR788_RS06085 - 1181788..1182858 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  DR788_RS06090 - 1182855..1183760 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=290822 DR788_RS06055 WP_001186192.1 1178449..1178925(-) (radC) [Escherichia coli strain 2009C-3378]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290822 DR788_RS06055 WP_001186192.1 1178449..1178925(-) (radC) [Escherichia coli strain 2009C-3378]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392