Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DR788_RS01500 Genome accession   NZ_CP034792
Coordinates   300660..301175 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 2009C-3378     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 295660..306175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS01455 csrA 296477..296662 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DR788_RS01485 yqaB 297890..298456 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DR788_RS01490 yqaA 298453..298881 (+) 429 WP_001287450.1 YqaA family protein -
  DR788_RS01495 gshA 298954..300510 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  DR788_RS01500 luxS 300660..301175 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  DR788_RS01505 emrB 301239..302777 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DR788_RS01510 emrA 302794..303966 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DR788_RS01515 emrR 304093..304623 (-) 531 WP_000378437.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DR788_RS01520 ygaH 304714..305049 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  DR788_RS01525 ygaZ 305039..305776 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=290812 DR788_RS01500 WP_001130215.1 300660..301175(+) (luxS) [Escherichia coli strain 2009C-3378]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290812 DR788_RS01500 WP_001130215.1 300660..301175(+) (luxS) [Escherichia coli strain 2009C-3378]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725