Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECS88_RS21830 Genome accession   NC_011742
Coordinates   4017942..4018610 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli S88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4012942..4023610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECS88_RS21800 (ECS88_4046) rfaQ 4013120..4014178 (-) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECS88_RS21805 (ECS88_4047) waaA 4014591..4015868 (+) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECS88_RS21810 (ECS88_4048) coaD 4015876..4016355 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  ECS88_RS21815 (ECS88_4049) mutM 4016394..4017203 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECS88_RS21820 (ECS88_4050) rpmG 4017301..4017468 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECS88_RS21825 (ECS88_4051) rpmB 4017489..4017725 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECS88_RS21830 (ECS88_4052) radC 4017942..4018610 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  ECS88_RS21835 (ECS88_4053) coaBC 4018782..4020002 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECS88_RS21840 (ECS88_4054) dut 4019980..4020438 (+) 459 WP_000976066.1 dUTP diphosphatase -
  ECS88_RS21845 (ECS88_4055) slmA 4020545..4021141 (+) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  ECS88_RS21850 (ECS88_4056) pyrE 4021178..4021819 (-) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  ECS88_RS21855 (ECS88_4057) rph 4021885..4022601 (-) 717 WP_001247093.1 ribonuclease PH -
  ECS88_RS21865 (ECS88_4058) yicC 4022728..4023591 (+) 864 WP_000621317.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=29079 ECS88_RS21830 WP_001297375.1 4017942..4018610(-) (radC) [Escherichia coli S88]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=29079 ECS88_RS21830 WP_001297375.1 4017942..4018610(-) (radC) [Escherichia coli S88]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment