Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DCS32_RS07320 Genome accession   NZ_CP029151
Coordinates   1608141..1609511 (-) Length   456 a.a.
NCBI ID   WP_108877672.1    Uniprot ID   A0A2S1QBN5
Organism   Dokdonia sp. Dokd-P16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1603141..1614511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCS32_RS07300 (DCS32_07300) - 1603922..1604686 (+) 765 WP_108877668.1 exodeoxyribonuclease III -
  DCS32_RS07305 (DCS32_07305) - 1604701..1605684 (+) 984 WP_108877669.1 OmpA family protein -
  DCS32_RS07310 (DCS32_07310) - 1605745..1606779 (+) 1035 WP_108877670.1 aldo/keto reductase -
  DCS32_RS07315 (DCS32_07315) - 1606873..1608018 (-) 1146 WP_108877671.1 M23 family metallopeptidase -
  DCS32_RS07320 (DCS32_07320) radA 1608141..1609511 (-) 1371 WP_108877672.1 DNA repair protein RadA Machinery gene
  DCS32_RS07325 (DCS32_07325) - 1609632..1610777 (-) 1146 WP_108877673.1 alpha/beta hydrolase -
  DCS32_RS07330 (DCS32_07330) - 1610825..1611730 (-) 906 WP_108879258.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  DCS32_RS07335 (DCS32_07335) panD 1611784..1612134 (-) 351 WP_013750424.1 aspartate 1-decarboxylase -
  DCS32_RS07340 (DCS32_07340) panC 1612156..1613004 (-) 849 WP_108877674.1 pantoate--beta-alanine ligase -
  DCS32_RS07345 (DCS32_07345) - 1613115..1613927 (+) 813 WP_108877675.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50132.61 Da        Isoelectric Point: 7.4622

>NTDB_id=290780 DCS32_RS07320 WP_108877672.1 1608141..1609511(-) (radA) [Dokdonia sp. Dokd-P16]
MAKTKTTFFCQNCGTQHAKWQGQCNACKQWNTIVEEVVQKVDKKDWKSETAKVSGLTRTSKPLKIADISTASEARMNTKN
GELNRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLALPYKTLYVSGEESQQQIKMRAERINPESDQCYILTETKTQNIF
RHIEEMQPDIVIIDSIQTLHSDHIESTAGSISQIRETTSELIRFAKETATPVILIGHITKDGNIAGPKILEHMVDTVLQF
EGDRNHVYRILRAHKNRFGSTSELGIYEMQGSGLREVSNPSEILISKNDEDLSGTAIATTMEGMRPLMIEIQALVSTAVY
GTPQRSSTGYNVKRLNMLLAVLEKRAGFKLGAKDVFLNVTGGITVDDPAIDLAVVAAVLSSNVDIPVDKSMCFAAEIGLA
GEVRPVNRIEQRIVEAEKLGFTSIVISKYCKIPDTNYHINVIKVAKVHDVVRHLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=290780 DCS32_RS07320 WP_108877672.1 1608141..1609511(-) (radA) [Dokdonia sp. Dokd-P16]
ATGGCCAAAACAAAAACTACCTTTTTCTGTCAGAACTGTGGCACACAGCATGCCAAGTGGCAAGGCCAGTGTAATGCTTG
CAAGCAATGGAATACCATTGTTGAAGAGGTTGTACAAAAAGTAGACAAAAAGGACTGGAAGTCTGAAACTGCAAAGGTTT
CTGGACTTACACGCACCAGTAAACCCCTTAAGATTGCCGATATTTCTACCGCTTCTGAGGCTAGAATGAATACTAAAAAC
GGAGAACTTAACCGTGTTCTAGGTGGTGGCTTAGTTCCTGGATCGCTTACTCTTCTAGGTGGAGAACCTGGAATAGGAAA
AAGTACTTTGCTATTACAGATATCACTAGCGCTACCTTACAAAACACTCTACGTCTCTGGAGAGGAAAGTCAGCAGCAAA
TAAAAATGCGTGCTGAGCGTATTAATCCAGAAAGCGACCAGTGTTATATTCTTACAGAGACAAAAACTCAAAATATCTTT
AGGCACATAGAAGAGATGCAGCCAGATATTGTGATTATAGACTCTATACAAACGCTACATTCTGATCATATAGAAAGTAC
CGCTGGAAGTATCTCACAAATACGTGAAACCACTTCAGAGCTGATACGATTTGCTAAGGAAACAGCAACACCTGTGATTC
TTATAGGTCACATCACAAAAGATGGAAACATCGCTGGCCCAAAAATTCTTGAACACATGGTAGATACCGTTCTTCAATTT
GAAGGAGATCGCAACCATGTTTATAGAATTTTAAGAGCACACAAAAACCGTTTTGGGAGCACTAGCGAACTAGGTATTTA
TGAGATGCAGGGCTCAGGGTTGAGAGAGGTGAGCAATCCAAGTGAGATTCTCATTTCAAAAAATGATGAAGACTTGAGCG
GGACAGCAATCGCAACCACGATGGAAGGTATGCGACCGCTTATGATTGAGATTCAAGCGCTTGTGAGCACTGCAGTGTAT
GGAACACCACAACGTAGCTCAACAGGATACAATGTAAAGCGACTCAATATGCTTCTCGCTGTATTAGAAAAACGAGCAGG
TTTCAAACTAGGCGCAAAAGATGTTTTTCTCAACGTGACTGGAGGAATCACTGTAGATGATCCTGCTATAGATCTTGCAG
TGGTAGCAGCAGTATTATCGAGCAACGTAGATATACCTGTAGATAAATCCATGTGTTTTGCGGCAGAGATAGGTCTCGCA
GGAGAAGTTCGGCCCGTAAATCGTATTGAACAACGCATCGTAGAGGCAGAAAAACTAGGTTTTACAAGCATCGTGATTTC
AAAATATTGCAAAATACCTGACACTAATTATCACATCAATGTGATTAAAGTTGCAAAAGTCCATGATGTCGTGAGGCACC
TTTTTGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(68-222)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1QBN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.498

100

0.496
  radA Streptococcus mitis SK321

49.345

100

0.496
  radA Streptococcus pneumoniae Rx1

49.345

100

0.496
  radA Streptococcus pneumoniae D39

49.345

100

0.496
  radA Streptococcus pneumoniae R6

49.345

100

0.496
  radA Streptococcus pneumoniae TIGR4

49.345

100

0.496
  radA Streptococcus mitis NCTC 12261

49.345

100

0.496

Multiple sequence alignment