Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CRG85_RS17010 Genome accession   NZ_CP034787
Coordinates   3486298..3486903 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ECCNB20-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3481298..3491903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRG85_RS16990 (CRG85_16985) aes 3481335..3482294 (+) 960 WP_000801813.1 acetyl esterase -
  CRG85_RS16995 (CRG85_16990) hemH 3482291..3483253 (-) 963 WP_077491502.1 ferrochelatase -
  CRG85_RS17000 (CRG85_16995) adk 3483489..3484133 (-) 645 WP_001220233.1 adenylate kinase -
  CRG85_RS17005 (CRG85_17000) htpG 3484314..3486188 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  CRG85_RS17010 (CRG85_17005) recR 3486298..3486903 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CRG85_RS17015 (CRG85_17010) ybaB 3486903..3487232 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CRG85_RS17020 (CRG85_17015) dnaX 3487285..3489216 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  CRG85_RS17025 (CRG85_17020) apt 3489345..3489896 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CRG85_RS17030 (CRG85_17025) ybaN 3490049..3490426 (-) 378 WP_001188905.1 DUF454 family protein -
  CRG85_RS17035 (CRG85_17030) priC 3490496..3491023 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  CRG85_RS17040 (CRG85_17035) rsmS 3491037..3491198 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  CRG85_RS26995 - 3491251..3491349 (-) 99 Protein_3308 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=290778 CRG85_RS17010 WP_001195025.1 3486298..3486903(-) (recR) [Escherichia coli strain ECCNB20-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=290778 CRG85_RS17010 WP_001195025.1 3486298..3486903(-) (recR) [Escherichia coli strain ECCNB20-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment