Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRG85_RS14680 Genome accession   NZ_CP034787
Coordinates   3006982..3007458 (-) Length   158 a.a.
NCBI ID   WP_001186742.1    Uniprot ID   -
Organism   Escherichia coli strain ECCNB20-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3001982..3012458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRG85_RS14630 (CRG85_14625) aat 3002101..3002805 (+) 705 WP_001241677.1 leucyl/phenylalanyl-tRNA--protein transferase -
  CRG85_RS14635 (CRG85_14630) infA 3003090..3003308 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  CRG85_RS14645 (CRG85_14640) - 3003798..3004640 (-) 843 WP_072643849.1 DUF4942 domain-containing protein -
  CRG85_RS14650 (CRG85_14645) - 3004725..3004922 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  CRG85_RS14655 (CRG85_14650) - 3004950..3005147 (-) 198 Protein_2849 DUF5983 family protein -
  CRG85_RS14660 (CRG85_14655) cbtA 3005144..3005521 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CRG85_RS14665 (CRG85_14660) - 3005611..3005979 (-) 369 WP_001285390.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRG85_RS14670 (CRG85_14665) - 3006029..3006679 (-) 651 WP_113387941.1 antitoxin of toxin-antitoxin stability system -
  CRG85_RS14675 (CRG85_14670) - 3006692..3006913 (-) 222 WP_001544501.1 DUF987 domain-containing protein -
  CRG85_RS14680 (CRG85_14675) radC 3006982..3007458 (-) 477 WP_001186742.1 RadC family protein Machinery gene
  CRG85_RS14685 (CRG85_14680) - 3007473..3007958 (-) 486 WP_113387942.1 antirestriction protein -
  CRG85_RS14690 (CRG85_14685) - 3008049..3008867 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  CRG85_RS14700 (CRG85_14695) - 3009194..3012040 (-) 2847 WP_089562889.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=290772 CRG85_RS14680 WP_001186742.1 3006982..3007458(-) (radC) [Escherichia coli strain ECCNB20-2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290772 CRG85_RS14680 WP_001186742.1 3006982..3007458(-) (radC) [Escherichia coli strain ECCNB20-2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

60.577

65.823

0.399