Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3363_RS11145 Genome accession   NZ_CP029150
Coordinates   2223868..2224506 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain GZ20170512     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2218868..2229506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS11100 (C3363_11180) rplP 2218902..2219312 (-) 411 WP_006249357.1 50S ribosomal protein L16 -
  C3363_RS11105 (C3363_11185) rpsC 2219325..2220029 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  C3363_RS11110 (C3363_11190) rplV 2220047..2220379 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  C3363_RS11115 (C3363_11195) rpsS 2220390..2220665 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  C3363_RS11120 (C3363_11200) rplB 2220694..2221515 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  C3363_RS11125 (C3363_11205) rplW 2221536..2221841 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  C3363_RS11130 (C3363_11210) rplD 2221838..2222440 (-) 603 WP_005711169.1 50S ribosomal protein L4 -
  C3363_RS11135 (C3363_11215) rplC 2222456..2223082 (-) 627 WP_005711168.1 50S ribosomal protein L3 -
  C3363_RS11140 (C3363_11220) rpsJ 2223099..2223410 (-) 312 WP_035524682.1 30S ribosomal protein S10 -
  C3363_RS11145 (C3363_11225) sxy/tfoX 2223868..2224506 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  C3363_RS11150 (C3363_11230) fumC 2224653..2226047 (+) 1395 WP_010786461.1 class II fumarate hydratase -
  C3363_RS11155 (C3363_11235) - 2226229..2227407 (+) 1179 WP_010786460.1 ATP-grasp domain-containing protein -
  C3363_RS11160 (C3363_11240) - 2227678..2228649 (+) 972 WP_159179901.1 IS110 family transposase -
  C3363_RS11165 (C3363_11245) - 2228705..2229463 (+) 759 WP_021112874.1 esterase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=290770 C3363_RS11145 WP_005711167.1 2223868..2224506(+) (sxy/tfoX) [Glaesserella parasuis strain GZ20170512]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=290770 C3363_RS11145 WP_005711167.1 2223868..2224506(+) (sxy/tfoX) [Glaesserella parasuis strain GZ20170512]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment