Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DBX24_RS08700 Genome accession   NZ_CP029149
Coordinates   1904949..1906292 (-) Length   447 a.a.
NCBI ID   WP_120489021.1    Uniprot ID   A0A6P1QY75
Organism   Bergeyella cardium strain HPQL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1899949..1911292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX24_RS08685 (DBX24_08685) - 1900605..1901855 (-) 1251 WP_160224609.1 hypothetical protein -
  DBX24_RS08690 (DBX24_08690) - 1902124..1904262 (+) 2139 WP_160224610.1 helix-turn-helix domain-containing protein -
  DBX24_RS08695 (DBX24_08695) - 1904291..1904872 (-) 582 WP_120489022.1 ACP phosphodiesterase -
  DBX24_RS08700 (DBX24_08700) radA 1904949..1906292 (-) 1344 WP_120489021.1 DNA repair protein RadA Machinery gene
  DBX24_RS08705 (DBX24_08705) - 1906377..1908191 (+) 1815 WP_160224611.1 TonB-dependent siderophore receptor -
  DBX24_RS08710 (DBX24_08710) purF 1908318..1909790 (-) 1473 WP_120489020.1 amidophosphoribosyltransferase -
  DBX24_RS08715 (DBX24_08715) purC 1909806..1910525 (-) 720 WP_160224612.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49609.35 Da        Isoelectric Point: 6.6475

>NTDB_id=290745 DBX24_RS08700 WP_120489021.1 1904949..1906292(-) (radA) [Bergeyella cardium strain HPQL]
MAKLKTSYFCQNCGMQYSKWLGQCQNCGEWNTIVEEVVEKKSKSILPKTKQHIINIIEVETSEEPRIKTPSEELNRVLGG
GIVLGSVTLIGGEPGIGKSTLLLQLALKMKKRILYVSGEESASQIKMRADRLTELQNPNCYLFTETSIEKIIYEAKKLQP
DFMIIDSIQTLHSAEIESSAGSVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHLF
RLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSQILITKKLEELSGNAIAVTLEGNRPMLLEIQALVSTAVYGTPQRSST
GFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASILSSNEDIAISERYCFAGEIGLSGEIRPVSQ
IEQRISEAEKLGYEKIFVSSLNKISKKKYGIKIEEVGKIEDFVELLF

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=290745 DBX24_RS08700 WP_120489021.1 1904949..1906292(-) (radA) [Bergeyella cardium strain HPQL]
ATGGCGAAACTTAAAACTTCTTATTTCTGTCAGAACTGTGGTATGCAGTACTCCAAATGGCTTGGGCAGTGCCAGAACTG
CGGTGAGTGGAATACGATAGTAGAAGAGGTTGTGGAGAAGAAATCAAAGTCCATCCTTCCCAAAACTAAGCAGCACATCA
TCAATATTATTGAGGTAGAAACCAGTGAAGAGCCTCGCATTAAAACCCCTTCTGAGGAGCTCAACAGGGTGCTTGGTGGA
GGCATTGTTCTCGGCTCGGTTACCCTTATCGGTGGGGAGCCCGGCATTGGTAAATCTACTTTACTGCTTCAGCTGGCACT
CAAAATGAAGAAGAGAATCCTCTATGTATCGGGGGAAGAAAGCGCTTCGCAAATCAAAATGAGGGCAGACAGGCTTACGG
AACTTCAAAACCCGAACTGCTATCTCTTCACCGAGACTTCCATAGAGAAAATCATCTACGAGGCAAAGAAACTCCAGCCC
GACTTTATGATTATAGACTCCATTCAGACCCTTCATTCGGCGGAGATAGAGAGTTCGGCAGGTTCGGTATCTCAAATCCG
AGAATGTTCTAATGAGATTATAAAGTACGCAAAGGAGAATAATACCCCCGTTTTCCTCGTGGGGCATATCACGAAGGACG
GTCAGATTGCGGGTCCAAAGGTTTTAGAGCATATGGTAGATGTAGTCCTCAACTTTGATGGTGATAGGAACCACCTTTTC
CGTCTCCTCAGGGCGAATAAAAACCGTTTCGGTTCTACCTCCGAGATTGGTATCTATGAAATGATTTCTCAAGGGCTGAA
AGAGATTAAAAACCCATCGCAAATCCTTATTACCAAGAAATTAGAAGAGCTTTCGGGCAATGCTATTGCTGTAACTTTGG
AGGGGAACCGGCCGATGCTTCTGGAGATTCAAGCATTGGTGAGCACAGCAGTCTATGGCACGCCACAGCGGAGCAGTACG
GGTTTTGATGCCAAGAGGCTGAATATGCTCCTCGCCGTTTTAGAAAAGCGCGCGGGCTTCCAGCTCGGAGCGAAAGATGT
TTTCCTCAACATTACGGGAGGCATTAAAACCGATGACCCCGCTCTTGACCTTGCCGTTATCGCCTCTATCCTTTCCAGTA
ATGAGGATATTGCCATCTCCGAGCGCTATTGCTTTGCGGGAGAGATTGGTCTTAGTGGAGAAATTCGCCCTGTTTCTCAG
ATAGAGCAGCGCATCTCCGAAGCCGAAAAGTTAGGGTATGAGAAAATTTTTGTCTCCTCCCTCAATAAAATTTCCAAAAA
GAAATACGGCATCAAGATAGAAGAAGTAGGCAAAATAGAGGATTTCGTAGAACTGCTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-420)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1QY75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

50.441

100

0.512
  radA Streptococcus mitis NCTC 12261

50.441

100

0.512
  radA Streptococcus pneumoniae Rx1

50.441

100

0.512
  radA Streptococcus pneumoniae R6

50.441

100

0.512
  radA Streptococcus pneumoniae TIGR4

50.441

100

0.512
  radA Streptococcus mitis SK321

52.246

94.631

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

49.885

96.868

0.483

Multiple sequence alignment