Detailed information NTG0290744

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRG85_RS05095
• Genome accession: NZ_CP034787
• Coordinates: 1052483..1053475 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECCNB20-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1047483..1058475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRG85_RS05065 (CRG85_05065)	ispD	1047544..1048254 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CRG85_RS05070 (CRG85_05070)	ispF	1048254..1048733 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRG85_RS05075 (CRG85_05075)	truD	1048730..1049779 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CRG85_RS05080 (CRG85_05080)	surE	1049760..1050521 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRG85_RS05085 (CRG85_05085)	pcm	1050515..1051141 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRG85_RS05090 (CRG85_05090)	nlpD	1051326..1052420 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CRG85_RS05095 (CRG85_05095)	rpoS	1052483..1053475 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRG85_RS05100 (CRG85_05100)	ygbN	1053569..1054933 (-)	1365	WP_077492754.1	GntP family transporter	-
CRG85_RS05105 (CRG85_05105)	ygbM	1055022..1055798 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CRG85_RS05110 (CRG85_05110)	ygbL	1055803..1056441 (-)	639	WP_001278994.1	aldolase	-
CRG85_RS05115 (CRG85_05115)	otnK	1056438..1057700 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=290744 CRG85_RS05095 WP_000081550.1 1052483..1053475(+) (rpoS) [Escherichia coli strain ECCNB20-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=290744 CRG85_RS05095 WP_000081550.1 1052483..1053475(+) (rpoS) [Escherichia coli strain ECCNB20-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715