Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DDQ68_RS14885 Genome accession   NZ_CP029145
Coordinates   3352288..3353685 (+) Length   465 a.a.
NCBI ID   WP_109657009.1    Uniprot ID   A0A2Z3GL64
Organism   Hymenobacter nivis strain NBRC 111535     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3347288..3358685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDQ68_RS14865 (DDQ68_14865) - 3347597..3348427 (-) 831 WP_109656237.1 IS5 family transposase -
  DDQ68_RS14870 (DDQ68_14870) - 3348609..3349847 (+) 1239 WP_109657007.1 carboxylesterase family protein -
  DDQ68_RS14875 (DDQ68_14875) - 3349855..3351258 (-) 1404 WP_109658448.1 chloride channel protein -
  DDQ68_RS14880 (DDQ68_14880) - 3351513..3352220 (+) 708 WP_109657008.1 hypothetical protein -
  DDQ68_RS14885 (DDQ68_14885) radA 3352288..3353685 (+) 1398 WP_109657009.1 DNA repair protein RadA Machinery gene
  DDQ68_RS14890 (DDQ68_14890) - 3353907..3355478 (+) 1572 WP_109657010.1 redoxin domain-containing protein -
  DDQ68_RS14895 (DDQ68_14895) - 3355596..3356618 (+) 1023 WP_109657011.1 SPASM domain-containing protein -
  DDQ68_RS14900 (DDQ68_14900) floA 3356662..3357663 (-) 1002 WP_109657012.1 flotillin-like protein FloA -
  DDQ68_RS14905 (DDQ68_14905) - 3357706..3358164 (-) 459 WP_109657013.1 NfeD family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49997.40 Da        Isoelectric Point: 6.2637

>NTDB_id=290722 DDQ68_RS14885 WP_109657009.1 3352288..3353685(+) (radA) [Hymenobacter nivis strain NBRC 111535]
MAKVRTVFFCQSCGAQSAKWIGRCPACGEWNTYVEEVVQKETVATTTGQWKPASTVPGGSLTKTAKSVPLGDIIAEDEPR
ILTPDNELNRVLGGGLVPGSIVLIGGEPGIGKSTLMLQIALGLRQLRVLYVSGEESEAQIKMRAERLADGQHPGCYILTE
TNTQNIFRQIDQVKPNLVVIDSIQTMHSTLVESGAGSVSQVRECTAELLKYAKETGVPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGDGLRQVSNPSEILLSQRGESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDAKRLQMLLAVLEKRSGLRLGQQDVFLNIAGGLRLDDPALDAAVCAAVVSSLHDVPIAGDVCL
AAEVGLSGEIRAVSRLDQRLAEAEKLGFREMYVSQFNGKNLGALRPGLRVRPVGRLDEVLDGLFG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=290722 DDQ68_RS14885 WP_109657009.1 3352288..3353685(+) (radA) [Hymenobacter nivis strain NBRC 111535]
ATGGCCAAAGTAAGAACCGTATTTTTCTGCCAAAGCTGCGGCGCGCAGTCGGCCAAGTGGATTGGCCGCTGCCCGGCCTG
CGGCGAGTGGAACACCTACGTCGAAGAAGTCGTCCAGAAGGAAACCGTGGCCACCACCACCGGCCAGTGGAAGCCCGCCA
GCACCGTGCCTGGCGGTAGCCTTACCAAAACCGCCAAGTCGGTGCCGCTCGGCGACATTATTGCCGAAGACGAGCCCCGC
ATCCTCACCCCCGACAATGAGCTGAACCGCGTGCTGGGCGGGGGCTTGGTGCCGGGCTCCATCGTGCTCATTGGTGGTGA
GCCGGGCATCGGCAAGAGCACCCTCATGCTCCAGATTGCGCTGGGATTAAGGCAGTTACGGGTGCTGTACGTGAGCGGCG
AGGAGAGCGAGGCCCAAATAAAGATGCGCGCCGAGCGCCTAGCCGACGGCCAGCACCCTGGCTGCTACATCCTCACCGAA
ACCAACACTCAGAACATCTTCCGGCAGATTGACCAGGTGAAGCCCAACCTGGTCGTCATCGACTCCATCCAGACTATGCA
CTCCACGCTGGTGGAAAGCGGGGCCGGCAGCGTGAGCCAGGTGCGCGAGTGCACCGCCGAGCTGCTGAAATACGCCAAGG
AAACTGGCGTACCGGTGCTGCTCATCGGCCACATCACCAAAGACGGCAGCATTGCGGGGCCCAAAATCCTGGAGCACATG
GTGGATACCGTGCTGCAATTTGAGGGCGACCGGCACCTGAGCTACCGCATCCTGCGCACCACTAAAAACCGCTTCGGTAG
CACCTCAGAATTAGGTATTTACGAGATGCAGGGCGACGGCCTGCGCCAGGTCAGCAACCCCTCCGAAATCCTGCTCTCGC
AGCGCGGCGAAAGCCTGAGCGGCATGGCCATCGGCGCTACCCTGGAGGGCAACCGCCCGCTGCTGGTGGAAGTGCAGGCC
CTCGTGACGCCCGCCACCTACGGCACGCCGCAGCGCAGCAGCACCGGTTTCGACGCCAAGCGCCTGCAAATGCTGCTGGC
CGTGCTCGAGAAGCGCAGCGGCCTGCGCCTGGGCCAGCAAGACGTATTCCTGAACATTGCCGGAGGCTTGCGCCTCGACG
ACCCGGCCCTCGACGCGGCGGTGTGCGCGGCGGTGGTGTCGTCGCTGCACGACGTGCCCATCGCGGGCGACGTCTGCCTG
GCCGCCGAGGTGGGCCTGAGCGGCGAAATCCGGGCCGTAAGCCGCCTTGACCAGCGCCTGGCCGAGGCCGAAAAGCTGGG
CTTCCGCGAGATGTACGTCTCGCAGTTCAACGGCAAGAACCTAGGGGCCCTGCGCCCTGGCTTGCGGGTGCGCCCGGTGG
GCCGGCTCGACGAAGTGCTCGATGGCTTGTTCGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-229)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-462)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3GL64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.253

94.409

0.484
  radA Streptococcus pneumoniae Rx1

48.069

100

0.482
  radA Streptococcus pneumoniae R6

48.069

100

0.482
  radA Streptococcus pneumoniae TIGR4

48.069

100

0.482
  radA Streptococcus pneumoniae D39

48.069

100

0.482
  radA Streptococcus mitis NCTC 12261

47.65

100

0.48
  radA Streptococcus mitis SK321

47.65

100

0.48

Multiple sequence alignment