Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ENE68_RS18980 Genome accession   NZ_CP034784
Coordinates   3864175..3864651 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain ECZP248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3859175..3869651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENE68_RS24990 (ENE68_18940) - 3860520..3860654 (-) 135 Protein_3707 transcriptional regulator -
  ENE68_RS24180 - 3860624..3860773 (-) 150 Protein_3708 hypothetical protein -
  ENE68_RS18945 (ENE68_18945) - 3860879..3861055 (-) 177 WP_000839290.1 DUF957 domain-containing protein -
  ENE68_RS18950 (ENE68_18950) - 3861072..3861434 (-) 363 Protein_3710 DUF5983 family protein -
  ENE68_RS18955 (ENE68_18955) - 3861528..3862756 (+) 1229 WP_155105063.1 IS3 family transposase -
  ENE68_RS24570 - 3862768..3862899 (-) 132 Protein_3712 DUF5983 family protein -
  ENE68_RS18965 (ENE68_18965) - 3862896..3863270 (-) 375 WP_001514886.1 TA system toxin CbtA family protein -
  ENE68_RS18970 (ENE68_18970) - 3863360..3863728 (-) 369 WP_127762847.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ENE68_RS18975 (ENE68_18975) - 3863891..3864112 (-) 222 WP_000692286.1 DUF987 domain-containing protein -
  ENE68_RS18980 (ENE68_18980) radC 3864175..3864651 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  ENE68_RS18985 (ENE68_18985) - 3864667..3865149 (-) 483 WP_001508976.1 antirestriction protein -
  ENE68_RS18990 (ENE68_18990) - 3865241..3866059 (-) 819 WP_001508975.1 DUF932 domain-containing protein -
  ENE68_RS19000 (ENE68_19000) - 3866177..3866372 (-) 196 Protein_3719 DUF905 family protein -
  ENE68_RS19005 (ENE68_19005) - 3866443..3869289 (-) 2847 WP_044723308.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=290705 ENE68_RS18980 WP_001186774.1 3864175..3864651(-) (radC) [Escherichia coli strain ECZP248]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290705 ENE68_RS18980 WP_001186774.1 3864175..3864651(-) (radC) [Escherichia coli strain ECZP248]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399