Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ENE68_RS13735 Genome accession   NZ_CP034784
Coordinates   2782561..2783190 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ECZP248     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777561..2788190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENE68_RS13720 (ENE68_13720) helD 2777805..2779859 (-) 2055 WP_001295354.1 DNA helicase IV -
  ENE68_RS13725 (ENE68_13725) yccF 2779982..2780427 (+) 446 Protein_2687 YccF domain-containing protein -
  ENE68_RS13730 (ENE68_13730) yccS 2780437..2782598 (+) 2162 Protein_2688 YccS family putative transporter -
  ENE68_RS13735 (ENE68_13735) sxy/tfoX 2782561..2783190 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ENE68_RS13740 (ENE68_13740) sulA 2783409..2783918 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ENE68_RS13745 (ENE68_13745) ompA 2784275..2785315 (+) 1041 WP_000750416.1 porin OmpA -
  ENE68_RS13750 (ENE68_13750) matP 2785391..2785843 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ENE68_RS13755 (ENE68_13755) ycbZ 2786029..2787789 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=290689 ENE68_RS13735 WP_000839153.1 2782561..2783190(-) (sxy/tfoX) [Escherichia coli strain ECZP248]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290689 ENE68_RS13735 WP_000839153.1 2782561..2783190(-) (sxy/tfoX) [Escherichia coli strain ECZP248]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1