Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ENE68_RS08395 Genome accession   NZ_CP034784
Coordinates   1753143..1754570 (-) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain ECZP248     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748143..1759570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENE68_RS08365 (ENE68_08365) yeeZ 1748198..1749022 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  ENE68_RS08370 (ENE68_08370) yeeY 1749068..1749997 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  ENE68_RS08375 (ENE68_08375) yoeI 1750212..1750274 (+) 63 WP_010723108.1 membrane protein YoeI -
  ENE68_RS08380 (ENE68_08380) plaP 1750264..1751622 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  ENE68_RS08385 (ENE68_08385) tsuA 1751801..1752859 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  ENE68_RS08390 (ENE68_08390) tsuB 1752873..1753100 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ENE68_RS08395 (ENE68_08395) sbcB 1753143..1754570 (-) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  ENE68_RS08400 (ENE68_08400) dacD 1754779..1755945 (+) 1167 WP_069900936.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  ENE68_RS08405 (ENE68_08405) sbmC 1756064..1756537 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  ENE68_RS08410 (ENE68_08410) yeeA 1756736..1757794 (+) 1059 WP_001200891.1 FUSC family protein -
  ENE68_RS08415 (ENE68_08415) tmaR 1757966..1758295 (+) 330 WP_000450409.1 DUF496 family protein -
  ENE68_RS08420 (ENE68_08420) - 1758396..1758692 (-) 297 Protein_1653 EutP/PduV family microcompartment system protein -
  ENE68_RS08425 (ENE68_08425) - 1758671..1759030 (+) 360 WP_001570034.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=290677 ENE68_RS08395 WP_000980607.1 1753143..1754570(-) (sbcB) [Escherichia coli strain ECZP248]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=290677 ENE68_RS08395 WP_000980607.1 1753143..1754570(-) (sbcB) [Escherichia coli strain ECZP248]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583