Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ENE68_RS05105 Genome accession   NZ_CP034784
Coordinates   1049244..1049759 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ECZP248     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044244..1054759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENE68_RS05060 (ENE68_05060) csrA 1044831..1045016 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  ENE68_RS05090 (ENE68_05090) yqaB 1046474..1047040 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ENE68_RS05095 (ENE68_05095) yqaA 1047037..1047465 (+) 429 WP_001287454.1 YqaA family protein -
  ENE68_RS05100 (ENE68_05100) gshA 1047538..1049094 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  ENE68_RS05105 (ENE68_05105) luxS 1049244..1049759 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ENE68_RS05110 (ENE68_05110) emrB 1049823..1051361 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  ENE68_RS05115 (ENE68_05115) emrA 1051378..1052550 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ENE68_RS05120 (ENE68_05120) emrR 1052677..1053207 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ENE68_RS05125 (ENE68_05125) ygaH 1053298..1053633 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ENE68_RS05130 (ENE68_05130) ygaZ 1053623..1054360 (-) 738 WP_089075719.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=290668 ENE68_RS05105 WP_001130211.1 1049244..1049759(+) (luxS) [Escherichia coli strain ECZP248]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290668 ENE68_RS05105 WP_001130211.1 1049244..1049759(+) (luxS) [Escherichia coli strain ECZP248]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731