Detailed information NTG0290665

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ENE68_RS04825
• Genome accession: NZ_CP034784
• Coordinates: 996428..997420 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECZP248
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 991428..1002420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ENE68_RS04795 (ENE68_04795)	ispD	991489..992199 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ENE68_RS04800 (ENE68_04800)	ispF	992199..992678 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ENE68_RS04805 (ENE68_04805)	truD	992675..993724 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ENE68_RS04810 (ENE68_04810)	surE	993705..994466 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ENE68_RS04815 (ENE68_04815)	pcm	994460..995086 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ENE68_RS04820 (ENE68_04820)	nlpD	995271..996365 (+)	1095	WP_306801569.1	murein hydrolase activator NlpD	-
ENE68_RS04825 (ENE68_04825)	rpoS	996428..997420 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ENE68_RS04830 (ENE68_04830)	ygbN	997514..998878 (-)	1365	WP_000104429.1	GntP family transporter	-
ENE68_RS04835 (ENE68_04835)	ygbM	998967..999743 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ENE68_RS04840 (ENE68_04840)	ygbL	999748..1000386 (-)	639	WP_001278994.1	aldolase	-
ENE68_RS04845 (ENE68_04845)	otnK	1000383..1001645 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=290665 ENE68_RS04825 WP_000081550.1 996428..997420(+) (rpoS) [Escherichia coli strain ECZP248]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=290665 ENE68_RS04825 WP_000081550.1 996428..997420(+) (rpoS) [Escherichia coli strain ECZP248]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715