Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EM854_RS21530 Genome accession   NZ_CP034738
Coordinates   4433849..4434454 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain L65     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4428849..4439454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM854_RS25145 - 4429403..4429501 (+) 99 Protein_4176 hypothetical protein -
  EM854_RS21500 (EM854_21500) rsmS 4429554..4429715 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EM854_RS21505 (EM854_21505) priC 4429729..4430256 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  EM854_RS21510 (EM854_21510) ybaN 4430326..4430703 (+) 378 WP_001188905.1 DUF454 family protein -
  EM854_RS21515 (EM854_21515) apt 4430856..4431407 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EM854_RS21520 (EM854_21520) dnaX 4431536..4433467 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EM854_RS21525 (EM854_21525) ybaB 4433520..4433849 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EM854_RS21530 (EM854_21530) recR 4433849..4434454 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EM854_RS21535 (EM854_21535) htpG 4434564..4436438 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  EM854_RS21540 (EM854_21540) adk 4436619..4437263 (+) 645 WP_001220233.1 adenylate kinase -
  EM854_RS21545 (EM854_21545) hemH 4437499..4438461 (+) 963 WP_001250088.1 ferrochelatase -
  EM854_RS21550 (EM854_21550) aes 4438458..4439417 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=290645 EM854_RS21530 WP_001195025.1 4433849..4434454(+) (recR) [Escherichia coli strain L65]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=290645 EM854_RS21530 WP_001195025.1 4433849..4434454(+) (recR) [Escherichia coli strain L65]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443