Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC17_RS04905 Genome accession   NZ_CP029128
Coordinates   915367..915990 (-) Length   207 a.a.
NCBI ID   WP_070557448.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain AR380     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 910367..920990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC17_RS04890 (CSC17_0928) helD 910603..912657 (-) 2055 WP_016808043.1 DNA helicase IV -
  CSC17_RS04895 (CSC17_0929) - 912780..913226 (+) 447 WP_004100782.1 YccF domain-containing protein -
  CSC17_RS04900 (CSC17_0930) yccS 913244..915379 (+) 2136 WP_105890006.1 YccS family putative transporter -
  CSC17_RS04905 (CSC17_0931) sxy/tfoX 915367..915990 (-) 624 WP_070557448.1 TfoX/Sxy family DNA transformation protein Regulator
  CSC17_RS04910 (CSC17_0932) sulA 916452..916961 (+) 510 WP_026055887.1 SOS-induced cell division inhibitor SulA -
  CSC17_RS04915 (CSC17_0934) ompA 917315..918385 (+) 1071 WP_004100770.1 porin OmpA -
  CSC17_RS04920 (CSC17_0935) matP 918496..918948 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  CSC17_RS04925 (CSC17_0936) - 919134..920891 (+) 1758 WP_070557427.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23716.76 Da        Isoelectric Point: 10.2095

>NTDB_id=290628 CSC17_RS04905 WP_070557448.1 915367..915990(-) (sxy/tfoX) [Klebsiella oxytoca strain AR380]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSVLSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=290628 CSC17_RS04905 WP_070557448.1 915367..915990(-) (sxy/tfoX) [Klebsiella oxytoca strain AR380]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGTACTATCATTACAGACCGCTCG
CAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCGAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment