Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC19_RS00260 Genome accession   NZ_CP029126
Coordinates   49255..49881 (+) Length   208 a.a.
NCBI ID   WP_062934086.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain AR432     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 44255..54881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC19_RS00240 (CSC19_0042) - 44654..46414 (-) 1761 WP_062934085.1 AAA family ATPase -
  CSC19_RS00245 (CSC19_0044) matP 46601..47053 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  CSC19_RS00250 (CSC19_0045) ompA 47119..48171 (-) 1053 WP_017694761.1 porin OmpA -
  CSC19_RS00255 (CSC19_0046) sulA 48528..49037 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  CSC19_RS00260 (CSC19_0047) sxy/tfoX 49255..49881 (+) 627 WP_062934086.1 TfoX/Sxy family DNA transformation protein Regulator
  CSC19_RS00265 (CSC19_0048) yccS 49838..52000 (-) 2163 WP_015570895.1 YccS family putative transporter -
  CSC19_RS00270 (CSC19_0049) - 52019..52465 (-) 447 WP_015570894.1 YccF domain-containing protein -
  CSC19_RS00275 (CSC19_0050) helD 52588..54642 (+) 2055 WP_045142606.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23984.61 Da        Isoelectric Point: 9.4592

>NTDB_id=290605 CSC19_RS00260 WP_062934086.1 49255..49881(+) (sxy/tfoX) [Enterobacter hormaechei strain AR432]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVIAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=290605 CSC19_RS00260 WP_062934086.1 49255..49881(+) (sxy/tfoX) [Enterobacter hormaechei strain AR432]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGATCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567

Multiple sequence alignment