Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC21_RS16190 Genome accession   NZ_CP029122
Coordinates   3156051..3156680 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR434     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3151051..3161680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC21_RS16175 (CSC21_3135) helD 3151293..3153347 (-) 2055 WP_000420536.1 DNA helicase IV -
  CSC21_RS16180 (CSC21_3136) yccF 3153470..3153916 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CSC21_RS16185 (CSC21_3137) yccS 3153926..3156088 (+) 2163 WP_000875023.1 YccS family putative transporter -
  CSC21_RS16190 (CSC21_3138) sxy/tfoX 3156051..3156680 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CSC21_RS16195 (CSC21_3139) sulA 3156899..3157408 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CSC21_RS16205 (CSC21_3141) ompA 3157765..3158817 (+) 1053 WP_001361736.1 porin OmpA -
  CSC21_RS16210 (CSC21_3142) matP 3158893..3159345 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CSC21_RS16215 (CSC21_3143) ycbZ 3159531..3161291 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=290601 CSC21_RS16190 WP_000839153.1 3156051..3156680(-) (sxy/tfoX) [Escherichia coli strain AR434]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290601 CSC21_RS16190 WP_000839153.1 3156051..3156680(-) (sxy/tfoX) [Escherichia coli strain AR434]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment