Detailed information NTG0290599

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EM854_RS10150
• Genome accession: NZ_CP034738
• Coordinates: 2050431..2051423 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L65
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2045431..2056423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EM854_RS10125 (EM854_10125)	ygbN	2046086..2047450 (+)	1365	WP_000104439.1	GntP family transporter	-
EM854_RS10130 (EM854_10130)	-	2047489..2047725 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EM854_RS10135 (EM854_10135)	-	2047736..2049163 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EM854_RS10140 (EM854_10140)	-	2049163..2049756 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EM854_RS10145 (EM854_10145)	-	2049903..2050310 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
EM854_RS10150 (EM854_10150)	rpoS	2050431..2051423 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EM854_RS10155 (EM854_10155)	nlpD	2051486..2052580 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EM854_RS10160 (EM854_10160)	pcm	2052765..2053391 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EM854_RS10165 (EM854_10165)	surE	2053385..2054146 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
EM854_RS10170 (EM854_10170)	truD	2054127..2055176 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
EM854_RS10175 (EM854_10175)	ispF	2055173..2055652 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EM854_RS10180 (EM854_10180)	ispD	2055652..2056362 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=290599 EM854_RS10150 WP_000081550.1 2050431..2051423(-) (rpoS) [Escherichia coli strain L65]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=290599 EM854_RS10150 WP_000081550.1 2050431..2051423(-) (rpoS) [Escherichia coli strain L65]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715