Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EM854_RS00700 Genome accession   NZ_CP034738
Coordinates   163780..164409 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain L65     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 158780..169409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EM854_RS00680 (EM854_00680) ycbZ 159169..160929 (-) 1761 WP_000156526.1 Lon protease family protein -
  EM854_RS00685 (EM854_00685) matP 161115..161567 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EM854_RS00690 (EM854_00690) ompA 161643..162695 (-) 1053 WP_000750419.1 porin OmpA -
  EM854_RS00695 (EM854_00695) sulA 163052..163561 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EM854_RS00700 (EM854_00700) sxy/tfoX 163780..164409 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EM854_RS00705 (EM854_00705) yccS 164372..166534 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EM854_RS00710 (EM854_00710) yccF 166544..166990 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EM854_RS00715 (EM854_00715) helD 167113..169167 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=290574 EM854_RS00700 WP_000839153.1 163780..164409(+) (sxy/tfoX) [Escherichia coli strain L65]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290574 EM854_RS00700 WP_000839153.1 163780..164409(+) (sxy/tfoX) [Escherichia coli strain L65]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1