Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EKO22_RS12280 Genome accession   NZ_CP034671
Coordinates   2435844..2436779 (-) Length   311 a.a.
NCBI ID   WP_208678120.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11802     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430844..2441779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKO22_RS12255 (EKO22_12255) - 2430893..2431606 (+) 714 WP_208678124.1 DevA family ABC transporter ATP-binding protein -
  EKO22_RS12260 (EKO22_12260) - 2431709..2432371 (+) 663 WP_208674571.1 FHA domain-containing protein -
  EKO22_RS12265 (EKO22_12265) - 2432368..2433138 (+) 771 WP_341829599.1 HAD family hydrolase -
  EKO22_RS12270 (EKO22_12270) - 2433135..2434490 (-) 1356 WP_208678122.1 FAD-binding oxidoreductase -
  EKO22_RS12275 (EKO22_12275) - 2434493..2435812 (-) 1320 WP_208678121.1 cytosine deaminase -
  EKO22_RS12280 (EKO22_12280) rpoS 2435844..2436779 (-) 936 WP_208678120.1 RpoD/SigA family RNA polymerase sigma factor Regulator
  EKO22_RS12285 (EKO22_12285) - 2437003..2438346 (-) 1344 WP_208678119.1 OB-fold nucleic acid binding domain-containing protein -
  EKO22_RS12290 (EKO22_12290) - 2438446..2439819 (-) 1374 WP_208678118.1 MFS transporter -
  EKO22_RS12295 (EKO22_12295) - 2439816..2440256 (-) 441 WP_208679036.1 VOC family protein -
  EKO22_RS12305 (EKO22_12305) - 2440419..2440655 (-) 237 WP_208678117.1 hypothetical protein -
  EKO22_RS12310 (EKO22_12310) - 2440731..2441543 (+) 813 WP_208678116.1 DUF3598 family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35557.82 Da        Isoelectric Point: 8.6853

>NTDB_id=290565 EKO22_RS12280 WP_208678120.1 2435844..2436779(-) (rpoS) [Synechococcus elongatus PCC 11802]
MNGQERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAILKAGQKAKAKMLK
ANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKIS
RIKKMTRELTHQLRRLPSRVEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ
HEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLRVLSQQPLCPEAC

Nucleotide


Download         Length: 936 bp        

>NTDB_id=290565 EKO22_RS12280 WP_208678120.1 2435844..2436779(-) (rpoS) [Synechococcus elongatus PCC 11802]
ATGAACGGACAGGAACGCCGAAACCTGAACGCAGCGGTTGAGCGACACACCAGTGATCACGTTAGCTGGTATCTCAGTTC
AATTGGTAGAATCCCGCTGCTTACTGCCGAGGAAGAAGTCGAGCTTTCTCGCAAGGTGCAGCTGATGATGGCGTTACTCG
AAAACCCAGACGCTGAGAGCAATTCTGAGAATCAAGCCATTCTGAAAGCAGGTCAAAAAGCCAAGGCAAAAATGCTGAAA
GCAAACCTGCGGTTGGTGGTCAGCGTCGCCAAGAAATATCAAAACCAAGGTTTGGAATTACTTGATCTGATTCAAGAAGG
TTCCCTTGGCTTAGAGCGAGCAGTTGAAAAATTTGACCCAGCCTTAGGTTATAAATTTTCGACTTACGCCTATTGGTGGA
TTCGCCAGAGCATGACGCGGGCAATTGATAATCATGCCCGTACAATCCGTCTGCCCATCCACGTGAGCGAAAAGATTAGC
CGCATCAAAAAAATGACGCGGGAGCTGACCCATCAACTGCGGCGGTTGCCGAGTCGGGTGGAAATTGCTGAGGCTTTAAA
ACTGCCGCTGCAGGATGTGGAAATGCTGCTCAGCCAATCTACGCCTTGCACAAGTCTCGATGCCCAAGCCCGAGGTGATG
ATGGGCGCAGCTTCTTGGGTGACTTGATTCCAGATCCCAAGAGCCTAGAGCCGATGGATGCCATGGATCGCCACATCCAG
CATGAGCAAATCTCGACTTGGTTGGCGCACCTAACGGAACGGGAGCAGCAAGTGTTGCAACTGCGTTTTGGTCTGCATGA
CGGCGAGCAACATACGTTGGCGGAAATCGGGCGGCGGCTCAATGTTTCTCGGGAACGGATTCGCCAAGTGGAAGCGCGGG
CTTTGCAAAAACTGCGGGTCTTAAGTCAGCAACCGCTTTGTCCTGAGGCTTGCTAG

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(157-234)

Sigma-70 region 2 (Sigma70_r2)

(79-147)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(19-48)

Sigma-70, region 4 (Sigma70_r4)

(247-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.497

94.534

0.392