Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | EKO22_RS00715 | Genome accession | NZ_CP034671 |
| Coordinates | 135863..136825 (+) | Length | 320 a.a. |
| NCBI ID | WP_208673751.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus PCC 11802 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 130863..141825
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKO22_RS00675 (EKO22_00675) | - | 130883..131035 (+) | 153 | WP_208673737.1 | hypothetical protein | - |
| EKO22_RS00680 (EKO22_00680) | - | 131026..131511 (+) | 486 | WP_208677390.1 | GNAT family N-acetyltransferase | - |
| EKO22_RS00685 (EKO22_00685) | - | 131602..132354 (+) | 753 | WP_208677391.1 | HEAT repeat domain-containing protein | - |
| EKO22_RS00690 (EKO22_00690) | - | 132646..132849 (+) | 204 | WP_208677392.1 | DUF2997 domain-containing protein | - |
| EKO22_RS00695 (EKO22_00695) | - | 132892..133278 (+) | 387 | WP_011378170.1 | DUF1257 domain-containing protein | - |
| EKO22_RS00700 (EKO22_00700) | - | 133281..133670 (+) | 390 | WP_208677393.1 | ferredoxin | - |
| EKO22_RS00705 (EKO22_00705) | - | 133673..134434 (+) | 762 | WP_208677394.1 | class I SAM-dependent methyltransferase | - |
| EKO22_RS00710 (EKO22_00710) | - | 134462..135646 (+) | 1185 | WP_208677395.1 | aldo/keto reductase | - |
| EKO22_RS00715 (EKO22_00715) | rpoS | 135863..136825 (+) | 963 | WP_208673751.1 | RpoD/SigA family RNA polymerase sigma factor | Regulator |
| EKO22_RS00720 (EKO22_00720) | - | 137024..137569 (+) | 546 | WP_228382967.1 | HPP family protein | - |
| EKO22_RS00725 (EKO22_00725) | - | 137738..138490 (+) | 753 | WP_208677396.1 | hypothetical protein | - |
| EKO22_RS00730 (EKO22_00730) | - | 138639..139211 (+) | 573 | WP_208677397.1 | metal-binding protein | - |
| EKO22_RS00735 (EKO22_00735) | mazG | 139217..140056 (+) | 840 | WP_208679132.1 | nucleoside triphosphate pyrophosphohydrolase | - |
| EKO22_RS00740 (EKO22_00740) | - | 140082..140795 (-) | 714 | WP_338438374.1 | DUF3153 domain-containing protein | - |
| EKO22_RS00745 (EKO22_00745) | - | 140823..141350 (-) | 528 | WP_208677398.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 37136.25 Da Isoelectric Point: 6.9008
>NTDB_id=290522 EKO22_RS00715 WP_208673751.1 135863..136825(+) (rpoS) [Synechococcus elongatus PCC 11802]
MSTSSTAYSPDLVRAYLQEIGRVRLLTAEEELRYGRQVQRLMTLLDIQAELRDRLGHEPSKEEWAAAVELDLEDLDRQVE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRTLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
MSTSSTAYSPDLVRAYLQEIGRVRLLTAEEELRYGRQVQRLMTLLDIQAELRDRLGHEPSKEEWAAAVELDLEDLDRQVE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRTLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
Nucleotide
Download Length: 963 bp
>NTDB_id=290522 EKO22_RS00715 WP_208673751.1 135863..136825(+) (rpoS) [Synechococcus elongatus PCC 11802]
ATGTCTACCTCCTCCACCGCCTATAGTCCTGATTTAGTCCGTGCCTACCTGCAAGAGATTGGTCGGGTACGACTGCTCAC
CGCTGAGGAAGAGCTGCGCTACGGTCGGCAAGTCCAGCGCCTCATGACCCTTTTGGATATCCAAGCCGAGCTGCGCGATC
GCCTAGGCCACGAGCCGAGTAAAGAAGAGTGGGCGGCAGCCGTTGAACTTGATCTTGAGGATCTCGATCGCCAAGTTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATCGAGGCTAACTTGCGCCTTGTTGTTTCGATCGCAAAAAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACGCTAGGCCTCGAGCGTGGTGTCGAGAAATTCGACCCCTCTAAGG
GTTACAAATTCTCGACCTATGCCTACTGGTGGATTCGCCAAGCCATTACTCGGGCGATCGCTCAGCAATCTCGAACGATT
CGCCTGCCGATCCACATTACTGAAAAGCTGAACAAGCTCAAAAAAACTCAGCGTGAGCTTTCGCAGCAATTGGGTCGCAG
CGCTACAGCGTCCGAGTTGGCGGAAGTGCTGGAGTTGCCGCTCGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CTGTGTCGCTCGATGTCAAAGTCGGCGATAGCCAAGATACGGAATTGCAGGAACTGTTGGAAGACGAACAGTCATCTCCC
TCGGACTACGTTGAACAGGAGTCACTGCGCCGTGATCTCCGTACCTTGATGGCGGAACTGACACCGCAGCAGCAGGCGGT
CATTGCTCTGCGCTACGGCTTGGATGAAGGTGATAGCCTTTCCTTGGCCAAAGTCGGTGAACGTCTCAATATCAGTCGTG
AGCGCGTCCGGAAACTTGAGCGTCAAGCCATGGATCATCTGCGCCGCCGCAGTCGCCTCTTGGCAGAATATGCTGCTAGC
TAG
ATGTCTACCTCCTCCACCGCCTATAGTCCTGATTTAGTCCGTGCCTACCTGCAAGAGATTGGTCGGGTACGACTGCTCAC
CGCTGAGGAAGAGCTGCGCTACGGTCGGCAAGTCCAGCGCCTCATGACCCTTTTGGATATCCAAGCCGAGCTGCGCGATC
GCCTAGGCCACGAGCCGAGTAAAGAAGAGTGGGCGGCAGCCGTTGAACTTGATCTTGAGGATCTCGATCGCCAAGTTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATCGAGGCTAACTTGCGCCTTGTTGTTTCGATCGCAAAAAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACGCTAGGCCTCGAGCGTGGTGTCGAGAAATTCGACCCCTCTAAGG
GTTACAAATTCTCGACCTATGCCTACTGGTGGATTCGCCAAGCCATTACTCGGGCGATCGCTCAGCAATCTCGAACGATT
CGCCTGCCGATCCACATTACTGAAAAGCTGAACAAGCTCAAAAAAACTCAGCGTGAGCTTTCGCAGCAATTGGGTCGCAG
CGCTACAGCGTCCGAGTTGGCGGAAGTGCTGGAGTTGCCGCTCGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CTGTGTCGCTCGATGTCAAAGTCGGCGATAGCCAAGATACGGAATTGCAGGAACTGTTGGAAGACGAACAGTCATCTCCC
TCGGACTACGTTGAACAGGAGTCACTGCGCCGTGATCTCCGTACCTTGATGGCGGAACTGACACCGCAGCAGCAGGCGGT
CATTGCTCTGCGCTACGGCTTGGATGAAGGTGATAGCCTTTCCTTGGCCAAAGTCGGTGAACGTCTCAATATCAGTCGTG
AGCGCGTCCGGAAACTTGAGCGTCAAGCCATGGATCATCTGCGCCGCCGCAGTCGCCTCTTGGCAGAATATGCTGCTAGC
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.689 |
95.313 |
0.369 |