Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ELB75_RS07200 Genome accession   NZ_CP034670
Coordinates   1428310..1429002 (-) Length   230 a.a.
NCBI ID   WP_126983343.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1423310..1434002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS07180 (ELB75_07180) - 1424017..1425576 (-) 1560 WP_126983340.1 DUF4129 domain-containing protein -
  ELB75_RS07185 (ELB75_07185) - 1425573..1426553 (-) 981 WP_126983341.1 stage II sporulation protein M -
  ELB75_RS07190 (ELB75_07190) - 1426550..1427326 (-) 777 WP_126983342.1 RDD family protein -
  ELB75_RS07195 (ELB75_07195) mscL 1427712..1428143 (+) 432 WP_064090708.1 large conductance mechanosensitive channel protein MscL -
  ELB75_RS07200 (ELB75_07200) radC 1428310..1429002 (-) 693 WP_126983343.1 DNA repair protein RadC Machinery gene
  ELB75_RS07205 (ELB75_07205) hfq 1429279..1429539 (+) 261 WP_064090710.1 RNA chaperone Hfq -
  ELB75_RS07210 (ELB75_07210) - 1429646..1430344 (+) 699 WP_164726923.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  ELB75_RS07215 (ELB75_07215) - 1430442..1430834 (+) 393 WP_126983345.1 CrcB family protein -
  ELB75_RS07220 (ELB75_07220) argS 1430879..1432597 (+) 1719 WP_126983346.1 arginine--tRNA ligase -
  ELB75_RS07225 (ELB75_07225) rpiA 1432768..1433436 (-) 669 WP_126983347.1 ribose-5-phosphate isomerase RpiA -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25327.90 Da        Isoelectric Point: 5.9762

>NTDB_id=290495 ELB75_RS07200 WP_126983343.1 1428310..1429002(-) (radC) [Eikenella corrodens strain KCOM 3110]
MGIKHWPENERPREKLLHRGAGALSDAELLAILLRVGTQGMSAVDLARYLLQEFGSLNRLFSAPAAELTQHKGMGEAAYC
QFAVVREIGRRLLAEEMRDTPAFDSPDAVADYLVLQLAHEPVEVSVAMLLSSSHKLIAFQELSRGTVAENTVYIREVAKL
ALHYHAASLIIAHNHPGGSAEPSEADLAFTRQLQQALALLDVRLLDHFIVAGNRAVSFAANGWLREWETD

Nucleotide


Download         Length: 693 bp        

>NTDB_id=290495 ELB75_RS07200 WP_126983343.1 1428310..1429002(-) (radC) [Eikenella corrodens strain KCOM 3110]
ATGGGCATCAAACATTGGCCGGAAAACGAGCGGCCGCGTGAGAAACTGCTGCATCGCGGTGCGGGGGCATTGAGCGACGC
GGAGTTGCTGGCCATCCTGCTAAGGGTGGGCACGCAGGGGATGAGCGCGGTGGATTTGGCGCGTTACCTGCTGCAGGAAT
TCGGCTCACTCAACCGACTGTTTTCCGCGCCTGCCGCCGAACTGACGCAGCATAAGGGCATGGGCGAGGCGGCGTATTGC
CAGTTTGCCGTGGTGCGGGAAATCGGGCGGCGCCTGCTGGCCGAGGAAATGCGCGACACCCCGGCTTTCGATTCGCCCGA
TGCGGTGGCTGATTATCTGGTGCTGCAACTGGCGCACGAGCCGGTGGAAGTGAGCGTGGCGATGCTGTTGAGCAGCAGCC
ATAAGCTGATTGCCTTTCAGGAGCTGTCGCGCGGCACGGTGGCGGAAAACACGGTGTATATCCGCGAAGTGGCGAAACTT
GCCCTGCACTATCATGCGGCTTCGCTGATTATCGCGCACAACCATCCCGGCGGCTCGGCCGAGCCTTCCGAGGCGGATCT
GGCCTTTACCCGACAATTGCAGCAGGCGTTGGCGCTGCTGGACGTGCGGCTGCTGGATCATTTTATCGTGGCGGGCAACC
GGGCGGTGTCGTTTGCGGCAAACGGCTGGCTGCGGGAATGGGAAACGGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.256

96.957

0.4