Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   ELB75_RS06050 Genome accession   NZ_CP034670
Coordinates   1203200..1206889 (-) Length   1229 a.a.
NCBI ID   WP_126983151.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198200..1211889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS06020 (ELB75_06020) - 1200224..1201969 (+) 1746 WP_126983150.1 flotillin domain-containing protein -
  ELB75_RS06050 (ELB75_06050) recB 1203200..1206889 (-) 3690 WP_126983151.1 exodeoxyribonuclease V subunit beta Machinery gene
  ELB75_RS06055 (ELB75_06055) - 1207345..1208595 (+) 1251 WP_126983152.1 NAD(P)/FAD-dependent oxidoreductase -
  ELB75_RS06060 (ELB75_06060) yegQ 1208819..1210180 (+) 1362 WP_126983153.1 tRNA 5-hydroxyuridine modification protein YegQ -
  ELB75_RS06065 (ELB75_06065) asd 1210557..1211675 (-) 1119 WP_126983154.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 1229 a.a.        Molecular weight: 137111.39 Da        Isoelectric Point: 5.7540

>NTDB_id=290489 ELB75_RS06050 WP_126983151.1 1203200..1206889(-) (recB) [Eikenella corrodens strain KCOM 3110]
MQDFHVAQLPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRLRARLGEVLAALQSG
ETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAAIYTIHGFCLRVLGDYAFLCGVPFELETGPADTAARLVAAQD
FWREHVADHPQNARIAARFGITPASVLAEFSGSLKRALLDYRLPENRLPQIQKGLHAAWHKLQRNVEEIEAVYRRIKPQL
HGGTFNASIDTLFTELRQAVQEGLAQPVLSKPDKLLCFEENALRNRIRKNQHIEEADIAALQPLAVLGRRLAEIGEAEQE
AAIRLKLECLGYLKTRLAEDKRRSPRRDYDDLLIDVHAALSNPDHPEQAEALAQALAAKWRVALIDEFQDTDPLQYAIFH
TAFIRQGVPVFLVGDPKQAIYGFRGADIHAYLAAAADTAPEQSYTLHTNYRSHSNLVNGIGHLFSARSRPFVLPQIAYPN
VQAARIESLLSPAPEAAVAVRWINPSVEDGKLPNKDALRELCADYCAREIAARLNQALSGSLSIGGKHGGENVPLHPGQV
AVLVRTHSEAALVARALKRRGVRSVLLQQQSVFDTPEAEALHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNE
NRLAEWIALAETAAEAWQQHGIYTALTRFARQSGLEQHLLHTRNERSFTNFWQLAEILALAADECVTPSALAQWLEAQLQ
NVGKDKKNTEYQLRLESDEDLVKIVTMHAAKGLEYPLVFCPFVWDASRDLVQDWNIISQSNGRNLLLAKAQLGEEDERQL
FAEDLGERLRLLYVALTRAREQLVLYAAPCSNTPENTFAYLLAETGGDDCHAIRSHWSSLEGQGRAEALRQAWLKRIQSA
APGRLQWLEDEPPEASYRARDEQQGSYRALVLPERPLQFIRHTSFTGLSRQTLTAEEWLPEKLLADENPAAETERLPENE
RSEFLRSKSVSDELRSNGQNVVEPNGQADLWSNEAETALLAFPAGIQPGICLHSILEKTDFARPAAEQAASYADILDRHG
FEAEQWLPAVLEMVEAVRRAPLAENMQLADIPADSRVAEMGFVLHLNDFSLKRLRRWFARTDIGLPENAAAHLPQLDFHA
VTGFLNGFIDLIAAGKDSRVCVIDYKSNHLDSHLADYGQAAMSAAVSEHHYYLQALIYAVATARYLKQRRALPESIHVRY
LFVRGLNPHGQEGLWCWDIPVSALQEWLE

Nucleotide


Download         Length: 3690 bp        

>NTDB_id=290489 ELB75_RS06050 WP_126983151.1 1203200..1206889(-) (recB) [Eikenella corrodens strain KCOM 3110]
ATGCAGGATTTCCACGTTGCACAACTGCCGCTGCCGCCGCAGGGCACCCACCTTGTCGAGGCTTCCGCCGGCACGGGCAA
AACCTACAGCATTGCCGCGCTGTTCACCCGCCTGGTGGTGCTCGAAGGCTGGGCGCCGGAAAACATATTGGTGGTTACCT
TCACCGAAGCCGCCACCGCCGAGCTGAAAAACCGCCTGCGTGCCCGGCTGGGCGAAGTTTTGGCTGCCCTACAGAGCGGG
GAGACGCCGGCCGATGAGTTTCTGCAACATCTGCTGGCCGAAGCCTTGGCCAAACAAGAGCGCAGCAAACTCATCCTGCA
GCTGCAGGCCGCCCTGTCCGGCTTCGACACCGCCGCTATCTACACCATCCACGGCTTCTGCCTGCGCGTGCTGGGCGACT
ACGCCTTTTTGTGCGGCGTGCCCTTCGAGCTGGAAACCGGCCCCGCCGACACCGCCGCCCGCCTGGTGGCCGCACAGGAT
TTCTGGCGCGAACACGTGGCTGACCACCCGCAAAACGCGCGCATCGCCGCCCGCTTCGGCATCACCCCCGCCTCCGTGCT
AGCCGAATTTTCAGGTAGCCTCAAACGCGCCCTTTTGGACTACAGGCTACCTGAAAACCGTCTGCCGCAAATACAGAAAG
GCCTCCATGCCGCTTGGCACAAGCTGCAACGGAATGTGGAGGAAATCGAAGCCGTGTACCGCCGCATCAAGCCGCAGCTT
CACGGCGGCACATTCAATGCCTCCATCGACACCCTGTTTACCGAGCTCCGGCAAGCCGTACAAGAAGGCTTGGCGCAACC
CGTGCTTTCCAAGCCGGACAAGCTGCTGTGTTTTGAAGAAAACGCCCTGCGCAACAGAATCCGGAAAAACCAGCATATTG
AAGAAGCCGACATCGCCGCCCTCCAGCCCTTGGCCGTTCTCGGCCGCCGCCTGGCCGAAATCGGCGAAGCCGAGCAGGAA
GCAGCCATCCGCCTCAAGCTCGAATGCTTGGGCTACCTGAAAACCCGTTTGGCCGAAGACAAACGCCGCAGCCCGCGCCG
CGACTATGATGATTTGCTAATCGACGTACACGCCGCTCTATCCAACCCCGATCATCCAGAACAAGCCGAAGCGCTCGCCC
AAGCCCTGGCGGCCAAATGGCGTGTGGCGCTCATCGACGAATTCCAAGACACCGACCCGCTGCAATACGCGATTTTCCAC
ACCGCCTTTATCCGCCAAGGCGTACCCGTATTTTTGGTGGGCGACCCCAAACAGGCCATCTACGGCTTTCGCGGCGCCGA
CATCCATGCCTACCTCGCCGCCGCTGCCGACACTGCCCCCGAGCAAAGCTACACCCTACACACCAACTACCGTAGCCACA
GCAATCTGGTCAACGGCATCGGCCATCTGTTTTCCGCCCGCAGCCGCCCCTTTGTGCTGCCGCAGATTGCCTACCCCAAT
GTGCAGGCTGCCCGCATCGAGAGCTTGCTCAGCCCCGCGCCTGAAGCTGCCGTGGCCGTACGCTGGATTAATCCATCTGT
CGAAGATGGCAAACTGCCGAATAAAGATGCCTTGCGCGAACTCTGTGCCGATTATTGCGCCCGCGAAATTGCCGCACGGC
TCAATCAGGCGCTTTCAGGTAGCCTTTCCATCGGCGGCAAGCATGGCGGCGAAAACGTGCCGCTGCATCCGGGACAGGTA
GCCGTATTGGTCCGCACCCACAGCGAAGCCGCTCTGGTTGCGCGCGCGCTCAAACGCCGGGGCGTGCGCAGCGTATTGCT
GCAACAGCAATCGGTGTTCGACACGCCTGAGGCCGAAGCCCTACACGCCCTGTTGCTGTTCTGGCTGGCACCGCAGCAAA
CCGAATACCTGCGCTTCGTGCTCGGCGGCATTTTCTATGGCTACACCGCACAAGACCTGGCCGAATTGAACGGCAACGAA
AACCGCCTGGCCGAGTGGATCGCCCTGGCCGAAACCGCCGCCGAAGCCTGGCAGCAGCACGGCATCTACACCGCGCTCAC
CCGCTTTGCCCGCCAAAGCGGCCTCGAACAACACCTTCTGCACACCCGCAACGAACGCAGTTTCACCAATTTCTGGCAGC
TGGCCGAAATCCTGGCACTAGCCGCCGACGAATGCGTTACGCCCTCCGCATTGGCGCAATGGCTGGAAGCACAATTGCAA
AACGTTGGAAAAGACAAAAAAAACACGGAATACCAGCTGCGGCTGGAAAGCGATGAAGACTTGGTAAAAATCGTTACCAT
GCATGCGGCTAAAGGGCTGGAATACCCGCTGGTGTTTTGCCCTTTCGTGTGGGATGCCAGCCGCGATTTGGTGCAAGACT
GGAACATCATCAGCCAAAGCAACGGCCGAAACCTATTGTTGGCCAAAGCCCAGTTGGGCGAAGAAGACGAGCGGCAGCTG
TTTGCCGAAGACCTCGGCGAACGCCTGCGCCTCTTGTATGTCGCGCTCACCCGCGCCCGCGAGCAGCTCGTGCTCTACGC
CGCCCCCTGCAGCAACACTCCGGAAAACACCTTCGCCTATCTCTTGGCCGAAACAGGCGGGGACGATTGTCATGCCATCC
GCAGCCATTGGAGTAGCCTGGAAGGCCAAGGCCGAGCCGAAGCCCTGCGACAGGCTTGGCTTAAGCGCATCCAAAGCGCC
GCGCCCGGCCGGCTGCAATGGCTGGAAGACGAGCCGCCCGAAGCCAGTTACCGCGCCCGCGACGAACAGCAGGGCAGCTA
CCGCGCCCTCGTGCTGCCCGAGCGGCCGCTGCAATTTATCCGCCACACCAGCTTTACCGGCCTGAGCCGCCAAACCCTGA
CCGCCGAAGAGTGGCTACCTGAAAAATTGCTGGCCGATGAAAACCCCGCCGCCGAAACCGAAAGGCTACCTGAAAACGAG
CGCAGCGAGTTTCTGCGAAGCAAAAGTGTAAGCGACGAGTTGCGCTCCAACGGCCAAAATGTAGTTGAGCCAAACGGGCA
GGCCGATTTGTGGTCAAACGAAGCCGAAACTGCCTTGTTGGCCTTCCCTGCTGGTATCCAGCCCGGCATCTGCCTGCACA
GCATTTTGGAGAAAACCGACTTCGCCCGCCCCGCCGCCGAACAAGCGGCATCCTATGCCGATATCCTAGATAGACACGGC
TTCGAGGCCGAGCAATGGCTGCCGGCGGTGCTGGAAATGGTGGAAGCCGTGCGCCGTGCGCCGTTGGCAGAGAATATGCA
GTTGGCCGATATTCCCGCCGATAGCCGCGTAGCAGAAATGGGCTTCGTGCTGCACCTGAACGATTTCAGTTTGAAACGTC
TGCGCCGCTGGTTTGCCCGCACCGACATCGGGCTACCTGAAAACGCCGCCGCCCACCTGCCGCAGCTGGATTTCCACGCC
GTAACCGGCTTCCTCAACGGCTTCATCGACCTGATTGCCGCAGGAAAAGACAGCAGGGTGTGCGTTATCGACTACAAATC
CAACCACTTGGACAGCCATTTGGCCGATTACGGCCAAGCCGCCATGAGCGCGGCGGTGAGCGAACACCATTATTACCTGC
AAGCGCTGATTTACGCCGTAGCCACCGCACGCTACCTGAAACAACGCCGCGCCCTGCCCGAATCCATCCATGTGCGCTAC
CTGTTTGTGCGCGGCCTGAATCCGCACGGCCAGGAGGGCTTGTGGTGCTGGGATATCCCCGTTTCCGCCCTGCAGGAATG
GCTCGAATAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-436)

UvrD-like helicase C-terminal domain (UvrD_C)

(444-825)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

47.432

100

0.481
  recB Neisseria gonorrhoeae MS11

47.191

100

0.478
  recB Neisseria gonorrhoeae strain FA1090

47.111

100

0.478

Multiple sequence alignment