Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ELB75_RS05655 Genome accession   NZ_CP034670
Coordinates   1126828..1127361 (+) Length   177 a.a.
NCBI ID   WP_164726817.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121828..1132361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS05635 (ELB75_05635) - 1121879..1124248 (-) 2370 WP_126983083.1 penicillin-binding protein 1A -
  ELB75_RS05640 (ELB75_05640) pilM 1124379..1125479 (+) 1101 WP_241236116.1 type IV pilus assembly protein PilM -
  ELB75_RS05645 (ELB75_05645) - 1125481..1126167 (+) 687 WP_126983084.1 PilN domain-containing protein -
  ELB75_RS05650 (ELB75_05650) pilO 1126183..1126797 (+) 615 WP_126983085.1 type 4a pilus biogenesis protein PilO -
  ELB75_RS05655 (ELB75_05655) pilP 1126828..1127361 (+) 534 WP_164726817.1 pilus assembly protein PilP Machinery gene
  ELB75_RS05660 (ELB75_05660) pilQ 1127383..1129500 (+) 2118 WP_206501495.1 type IV pilus secretin family protein Machinery gene
  ELB75_RS05665 (ELB75_05665) - 1129530..1130078 (+) 549 WP_126983086.1 shikimate kinase -
  ELB75_RS05670 (ELB75_05670) aroB 1130078..1131154 (+) 1077 WP_126983087.1 3-dehydroquinate synthase -
  ELB75_RS05675 (ELB75_05675) - 1131407..1131814 (+) 408 WP_126983088.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19600.07 Da        Isoelectric Point: 6.9544

>NTDB_id=290486 ELB75_RS05655 WP_164726817.1 1126828..1127361(+) (pilP) [Eikenella corrodens strain KCOM 3110]
MKKNILWCSAVLLLTACSLTEGDLQQWMDNAQAEAKSKVRQPQIPTISKSPEYVDPVINGLNIFDLKRLRVNQQSGINAP
NPDRPKEILENFSLESLRYVGSIKRGGQVSAFVEAGGHTYTVRVGNYLGQNYGQITAITPDKLILSEVTEDSYGAWQRRT
AELELNASDASNQSKSN

Nucleotide


Download         Length: 534 bp        

>NTDB_id=290486 ELB75_RS05655 WP_164726817.1 1126828..1127361(+) (pilP) [Eikenella corrodens strain KCOM 3110]
ATGAAGAAAAATATACTATGGTGCTCAGCAGTTCTTTTGCTGACGGCCTGTTCTTTGACCGAGGGCGATCTGCAGCAGTG
GATGGATAATGCTCAGGCGGAAGCAAAAAGTAAGGTGCGCCAACCACAGATACCGACTATTTCAAAGTCTCCTGAGTATG
TGGATCCTGTCATTAATGGATTGAATATATTTGATCTTAAACGGCTGCGTGTGAACCAACAATCTGGTATTAATGCTCCA
AATCCTGATAGACCAAAAGAGATTTTGGAAAACTTTAGTTTAGAAAGCTTGCGTTATGTAGGCTCTATTAAACGAGGTGG
GCAAGTTTCCGCTTTCGTTGAGGCAGGAGGTCACACCTATACCGTACGCGTTGGCAATTATCTTGGCCAAAACTATGGGC
AGATTACTGCTATTACTCCGGACAAACTGATTTTGTCGGAGGTAACTGAAGATAGCTATGGTGCATGGCAACGTCGAACA
GCGGAATTGGAGTTAAATGCTTCAGACGCTTCTAACCAATCAAAATCTAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

48.555

97.74

0.475