Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   ELB75_RS05590 Genome accession   NZ_CP034670
Coordinates   1112677..1114509 (-) Length   610 a.a.
NCBI ID   WP_126983075.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107677..1119509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS05565 (ELB75_05565) - 1107742..1108716 (-) 975 WP_126983071.1 class 1 fructose-bisphosphatase -
  ELB75_RS05570 (ELB75_05570) - 1108927..1109499 (-) 573 WP_164726815.1 DUF2059 domain-containing protein -
  ELB75_RS12470 - 1109692..1109853 (-) 162 WP_156503702.1 hypothetical protein -
  ELB75_RS05580 (ELB75_05580) - 1110336..1112123 (+) 1788 WP_126983073.1 2-isopropylmalate synthase -
  ELB75_RS05585 (ELB75_05585) - 1112371..1112631 (-) 261 WP_126983074.1 hypothetical protein -
  ELB75_RS05590 (ELB75_05590) recQ 1112677..1114509 (-) 1833 WP_126983075.1 DNA helicase RecQ Machinery gene
  ELB75_RS05595 (ELB75_05595) - 1114591..1115025 (+) 435 WP_126983076.1 surface-adhesin E family protein -
  ELB75_RS05600 (ELB75_05600) - 1115052..1115387 (+) 336 WP_241236114.1 hypothetical protein -
  ELB75_RS05605 (ELB75_05605) - 1115799..1117928 (-) 2130 WP_126983078.1 lysine decarboxylase LdcC -
  ELB75_RS05615 (ELB75_05615) - 1118795..1119394 (-) 600 WP_126984216.1 TIGR00730 family Rossman fold protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68543.04 Da        Isoelectric Point: 7.3326

>NTDB_id=290485 ELB75_RS05590 WP_126983075.1 1112677..1114509(-) (recQ) [Eikenella corrodens strain KCOM 3110]
MPQPSALNILREVFGYHAFRGRQEEIVNALAEGQNLLVLMPTGGGKSLCYQIPALMRRGLAVVVSPLIALMDDQVAALQA
AGVAAASVHSGIGSSQVQQIADTIEAGYLKLLYVSPERLVSERFLRFLDHTEISLFAIDEAHCVSQWGHDFRPEYRQLGL
LADRYPAIPRIALTATADAETRADIKHYLKLENAAEYIASFDRPNIYYQIIEKNNGKKQLLDFLNSRPHGESGIVYCLSR
KKVEDTAAFLNEHGYRALPYHAGLTMTERNENQHRFTREEGFIIVATVAFGMGIDKPDVRFVAHLDMPQSIEHFYQESGR
AGRDGQPAASWLCYGLNDYSLLRERIQTGNSSDFQKQIEQQKLEAMFAVCETSGCRRAALLRHFGEAIPPCGHCDNCLHP
PVLFNATENVQKLLSCVYRVGQRFAAGYVINVLRGKADDWIRQNCHDQLSTYGIGTALSDKEWRGIIRQCIGQGLLATDP
HNYHALMLTQAARPVLQGKQAVMLRPLKREKSATRTPREQWLRTEREERLWQALRQWRTERARADNVPSYIVCGDRTLQD
IVQQRPVSLTELQNIYGLGEAKIQKFGSGILEVCAQFTQDSDTATTLPDA

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=290485 ELB75_RS05590 WP_126983075.1 1112677..1114509(-) (recQ) [Eikenella corrodens strain KCOM 3110]
ATGCCACAACCCTCTGCCCTCAACATCCTGCGCGAAGTTTTCGGCTACCACGCCTTCCGGGGGCGGCAGGAAGAAATCGT
GAACGCGCTGGCAGAAGGGCAAAACCTGCTGGTGCTGATGCCCACCGGCGGCGGCAAATCCCTGTGCTATCAAATTCCCG
CCCTGATGCGGCGCGGGCTGGCCGTGGTGGTGTCGCCGCTGATTGCCCTGATGGACGACCAAGTGGCCGCCCTGCAGGCC
GCAGGCGTGGCCGCCGCCAGCGTGCACAGCGGCATCGGCAGCAGCCAGGTGCAGCAGATTGCCGACACCATCGAAGCAGG
CTACCTGAAACTGCTCTACGTTTCCCCCGAGCGCCTGGTGAGCGAACGCTTCCTGCGCTTTCTCGACCACACCGAAATCA
GCCTGTTCGCCATCGACGAAGCCCACTGCGTGAGCCAATGGGGGCACGACTTCCGCCCCGAATACCGCCAGCTCGGCCTC
CTGGCCGACCGCTATCCCGCCATCCCCCGCATCGCCCTCACCGCCACCGCAGACGCCGAAACCCGTGCCGACATCAAACA
CTACCTCAAACTGGAAAACGCCGCCGAATACATCGCCAGCTTCGACCGCCCCAATATCTACTACCAAATCATCGAAAAAA
ACAACGGCAAAAAACAGCTGCTCGATTTTCTGAATAGCCGCCCCCACGGCGAAAGCGGCATTGTTTACTGCCTAAGCCGC
AAAAAAGTGGAAGACACCGCCGCCTTTTTAAACGAACACGGCTACCGCGCCCTGCCTTATCACGCCGGCCTCACCATGAC
CGAGCGCAACGAAAACCAACACCGCTTCACCCGCGAAGAAGGCTTTATCATCGTGGCCACCGTCGCCTTCGGCATGGGCA
TCGACAAACCCGACGTGCGCTTCGTCGCCCACCTCGACATGCCGCAAAGCATCGAACACTTCTACCAGGAAAGCGGCCGC
GCCGGGCGCGACGGCCAGCCCGCCGCCAGCTGGCTGTGCTACGGCCTCAACGACTATTCCCTGCTGCGCGAACGCATCCA
AACCGGCAACAGCAGCGACTTCCAAAAGCAAATCGAACAGCAAAAACTCGAAGCCATGTTTGCCGTGTGCGAAACCTCCG
GCTGCCGCCGCGCCGCCCTGTTGCGCCACTTCGGCGAAGCAATCCCCCCCTGCGGCCACTGCGACAACTGCCTGCACCCG
CCCGTCCTCTTCAACGCCACCGAAAACGTGCAGAAACTCCTCAGCTGCGTATACCGCGTCGGCCAGCGCTTCGCCGCCGG
CTACGTCATCAACGTATTGCGCGGCAAAGCCGACGACTGGATCCGCCAAAACTGCCACGACCAGCTCTCCACCTACGGCA
TCGGCACCGCCCTGTCCGACAAAGAATGGCGCGGCATCATCCGCCAATGCATCGGCCAAGGCCTGCTCGCCACCGACCCG
CACAACTACCACGCCCTCATGCTCACCCAAGCCGCCCGCCCCGTGCTGCAAGGCAAGCAGGCCGTGATGCTGCGCCCGCT
CAAACGCGAAAAATCCGCCACCCGCACCCCGCGCGAACAATGGCTGCGCACCGAGCGCGAAGAACGCCTCTGGCAAGCCC
TGCGCCAATGGCGCACCGAACGTGCCCGCGCCGACAACGTGCCCTCCTACATCGTGTGCGGCGACCGCACCCTGCAAGAC
ATCGTACAACAACGCCCCGTCAGCCTCACCGAACTGCAAAACATCTACGGCTTGGGCGAAGCCAAAATCCAAAAATTCGG
CAGCGGTATCCTCGAAGTCTGCGCCCAATTCACTCAAGACAGCGACACAGCAACCACCCTGCCAGATGCCTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(527-593)

RecQ zinc-binding (RecQ_Zn_bind)

(337-398)

RQC domain (RQC)

(400-511)

DEAD/DEAH box helicase (DEAD)

(23-180)

Helicase conserved C-terminal domain (Helicase_C)

(219-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

36.667

98.361

0.361

Multiple sequence alignment