Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ELB75_RS04995 Genome accession   NZ_CP034670
Coordinates   987142..989448 (+) Length   768 a.a.
NCBI ID   WP_241236109.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 982142..994448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS04980 (ELB75_04980) - 984475..985323 (+) 849 WP_241236108.1 OmpA family protein -
  ELB75_RS04985 (ELB75_04985) - 985576..985983 (+) 408 WP_126982980.1 bacteriohemerythrin -
  ELB75_RS04990 (ELB75_04990) - 986088..986768 (+) 681 WP_126982624.1 IS1595 family transposase -
  ELB75_RS04995 (ELB75_04995) comA 987142..989448 (+) 2307 WP_241236109.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELB75_RS05000 (ELB75_05000) dnaE 989616..993047 (+) 3432 WP_126982981.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 768 a.a.        Molecular weight: 84091.88 Da        Isoelectric Point: 9.4357

>NTDB_id=290481 ELB75_RS04995 WP_241236109.1 987142..989448(+) (comA) [Eikenella corrodens strain KCOM 3110]
MRKNKHNEVAMRLGGLCCWVAGVLLAFLLPAAHFVAVASTLALLLAVVGCFQRAHGAWWLLCGLLYGVWRVQLALSQQWS
AEPEFQRVRLDFQVASVAEASAQAVQFEAWAQTEAGERFRLLVSDRYLREWRPGSRWRMTVRVRPTVGERNENGFDREAW
ALSRHIDGMASAARERVELPPDTGWQPRWQNWRYERQQAWQQAAETYPNGAALMRALGGGGYGGLADEHWQAFRVLGINH
LISVSGLHIGMVALAAAYLARLLLLRLPLAEPRRWYLAAGLAAALFYSALAGFGVPIQRSLLMLAVFAWQWYRRGSPAPW
RAWWQALAVVLLFDPLSALGVGFWFSFGAVAALIWAAQGQLEAMPDDDAPEGGWLRTAKHSGKWRTALRAQYAATLLGFW
QAGQVFGTVPLAAPLANALLIPWFSWVLVPLALLAVLLPFEGYLKMAAAIGEHTMSAVVWAGNWMPTNALAHLPPLFWLA
VLAALAVWLLPRGLGLRPWAALVLAASCLYRTPAPEHGTAAVRIIDVGQGLALQVRTQKHWLLFDTGTAGAAQTQLVPNL
LAQGLPPPDVLVLSHHDADHDGGFPAFQVAFAPRKLYAGQPEAYAGAAGWCAGGTTWEWDGVYFEFLTPPRNPEADDNEQ
SCVLRVLAGGQAVLAGGDLGIAGERWLVGTYGDSLHSQLLVLGHHGSRSSSDSAYLNAVAPEAAVAANGFANPYGHPAAI
VRHRLSAHRIRLYTTARSGQLDFVLGQGGAMRPQRLGRRFWQRKPFGE

Nucleotide


Download         Length: 2307 bp        

>NTDB_id=290481 ELB75_RS04995 WP_241236109.1 987142..989448(+) (comA) [Eikenella corrodens strain KCOM 3110]
ATGAGAAAGAATAAACACAATGAGGTAGCTATGCGTTTGGGCGGGTTGTGCTGTTGGGTGGCGGGTGTGCTGCTGGCTTT
TTTGTTGCCAGCAGCACATTTTGTTGCCGTTGCCTCGACTTTGGCGCTGCTGCTTGCTGTGGTCGGCTGCTTCCAGCGTG
CCCATGGGGCGTGGTGGTTGCTGTGTGGGCTGCTTTACGGCGTGTGGCGGGTGCAGCTGGCGTTATCGCAGCAGTGGTCG
GCGGAGCCGGAGTTTCAACGGGTACGGCTGGATTTTCAGGTAGCCTCGGTGGCGGAGGCATCGGCGCAGGCGGTGCAGTT
TGAGGCTTGGGCGCAAACGGAAGCGGGGGAGCGGTTTCGGCTGCTGGTGTCAGACCGCTATTTGCGCGAGTGGCGGCCGG
GCAGCCGCTGGCGGATGACGGTGCGGGTGCGGCCTACGGTGGGCGAGCGCAATGAAAACGGCTTCGACCGCGAGGCTTGG
GCGTTGAGTCGGCATATCGACGGCATGGCTTCGGCTGCCCGCGAGCGGGTGGAGCTGCCGCCGGACACGGGCTGGCAACC
GCGTTGGCAAAACTGGCGCTACGAGCGGCAGCAGGCTTGGCAGCAGGCGGCGGAAACCTACCCGAACGGGGCGGCGCTGA
TGCGGGCTTTGGGGGGTGGCGGATACGGCGGGCTGGCGGATGAGCATTGGCAGGCGTTTCGCGTGTTGGGCATCAATCAT
CTGATCAGCGTGTCGGGGCTGCACATCGGCATGGTGGCGCTGGCGGCGGCATATTTGGCGCGGCTTTTGCTGCTGCGCCT
GCCGCTGGCGGAACCGCGCCGCTGGTATTTGGCGGCGGGCTTGGCTGCGGCTTTGTTTTATTCGGCCTTGGCCGGTTTCG
GCGTGCCGATTCAGCGCAGTTTGCTGATGCTGGCGGTGTTTGCCTGGCAATGGTATCGGCGCGGCAGCCCTGCGCCGTGG
CGGGCTTGGTGGCAGGCTTTGGCCGTGGTGCTGCTGTTCGACCCGCTCTCGGCTTTGGGCGTGGGATTTTGGTTTTCCTT
CGGCGCGGTGGCGGCGCTAATTTGGGCTGCACAAGGGCAGCTGGAGGCCATGCCGGATGACGATGCACCAGAAGGCGGCT
GGCTGCGTACGGCCAAGCATTCCGGCAAATGGCGCACCGCGCTGCGTGCCCAATATGCGGCTACGTTGTTGGGGTTTTGG
CAGGCCGGGCAGGTGTTCGGCACCGTGCCGCTGGCTGCGCCTTTGGCCAATGCGCTGTTGATTCCGTGGTTTTCCTGGGT
GTTGGTGCCGCTGGCCTTGCTGGCGGTGCTGCTGCCGTTTGAAGGCTACCTGAAAATGGCGGCTGCCATCGGTGAGCACA
CCATGAGTGCGGTGGTGTGGGCGGGCAATTGGATGCCCACCAACGCGCTGGCGCATTTGCCGCCGCTGTTTTGGCTGGCC
GTGTTGGCTGCGCTGGCAGTGTGGCTGTTGCCGCGCGGCCTGGGCTTGCGGCCTTGGGCGGCGCTGGTGTTGGCGGCATC
CTGCCTGTATCGCACGCCCGCGCCGGAGCACGGCACGGCGGCGGTGCGGATTATCGACGTGGGACAGGGGCTTGCCTTGC
AGGTGCGCACGCAAAAGCATTGGCTGCTGTTCGACACCGGCACGGCAGGGGCGGCGCAGACGCAGCTGGTGCCCAACCTG
CTGGCGCAGGGGCTGCCGCCGCCCGATGTACTGGTGCTCTCGCATCACGATGCTGACCACGACGGCGGCTTTCCTGCGTT
TCAGGTAGCCTTTGCGCCGCGCAAATTGTATGCCGGCCAGCCGGAAGCCTATGCCGGCGCAGCCGGATGGTGCGCCGGCG
GCACCACGTGGGAGTGGGACGGCGTGTATTTTGAATTCCTCACCCCGCCGAGAAACCCCGAAGCCGACGACAACGAGCAA
AGCTGCGTGTTGCGCGTGTTGGCGGGCGGCCAGGCCGTGCTGGCGGGCGGCGATTTGGGCATCGCGGGCGAGCGCTGGCT
GGTGGGCACATACGGCGATTCGCTGCACAGCCAATTATTGGTGCTGGGGCATCACGGCAGCCGCTCCTCATCCGATTCGG
CTTATCTGAACGCCGTAGCGCCCGAAGCGGCGGTGGCGGCCAACGGCTTCGCCAACCCCTACGGCCACCCCGCCGCCATC
GTGCGCCACCGCCTCTCCGCCCACCGCATCCGGCTCTACACCACCGCCCGCAGCGGGCAGCTGGATTTTGTGCTGGGGCA
GGGCGGGGCAATGCGGCCGCAGCGCTTGGGCAGAAGGTTTTGGCAGCGCAAGCCGTTTGGGGAGTGA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(35-170)

Competence protein (Competence)

(223-490)

Metallo-beta-lactamase superfamily (Lactamase_B)

(528-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

48.947

98.958

0.484