Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECS88_RS11860 Genome accession   NC_011742
Coordinates   2076312..2076788 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli S88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071312..2081788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECS88_RS11825 (ECS88_2093) - 2071476..2072381 (+) 906 WP_000203520.1 diguanylate cyclase regulator RdcB family protein -
  ECS88_RS11830 (ECS88_2094) - 2072378..2073448 (+) 1071 WP_000102624.1 patatin-like phospholipase family protein -
  ECS88_RS11835 (ECS88_2095) - 2073584..2074267 (+) 684 WP_001514307.1 hypothetical protein -
  ECS88_RS11840 (ECS88_2096) - 2074283..2074693 (+) 411 WP_000846713.1 hypothetical protein -
  ECS88_RS11850 (ECS88_2097) - 2074914..2075735 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  ECS88_RS11855 (ECS88_2098) - 2075817..2076296 (+) 480 WP_000860076.1 antirestriction protein -
  ECS88_RS11860 (ECS88_2099) radC 2076312..2076788 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  ECS88_RS11865 (ECS88_2100) yeeT 2076851..2077072 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECS88_RS11870 (ECS88_2101) cbeA 2077146..2077514 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECS88_RS11875 (ECS88_2102) cbtA 2077603..2077976 (+) 374 Protein_2031 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECS88_RS11880 (ECS88_2103) yeeW 2077973..2078167 (+) 195 WP_000988600.1 DUF5983 family protein -
  ECS88_RS27570 - 2078213..2078293 (+) 81 Protein_2033 hypothetical protein -
  ECS88_RS28345 - 2078582..2078728 (-) 147 Protein_2034 transposase domain-containing protein -
  ECS88_RS11890 - 2078782..2078964 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ECS88_RS11895 (ECS88_2106) tmaR 2079065..2079394 (-) 330 WP_000450409.1 DUF496 family protein -
  ECS88_RS11900 (ECS88_2107) yeeA 2079566..2080624 (-) 1059 WP_001200891.1 FUSC family protein -
  ECS88_RS11905 (ECS88_2108) sbmC 2080823..2081296 (-) 474 WP_001105398.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=29043 ECS88_RS11860 WP_001186773.1 2076312..2076788(+) (radC) [Escherichia coli S88]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29043 ECS88_RS11860 WP_001186773.1 2076312..2076788(+) (radC) [Escherichia coli S88]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment