Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EKH78_RS10035 Genome accession   NZ_CP034658
Coordinates   2043439..2043885 (+) Length   148 a.a.
NCBI ID   WP_000187523.1    Uniprot ID   P76362
Organism   Escherichia coli strain ATCC 98082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2038439..2048885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH78_RS10025 (EKH78_10115) agn43 2038670..2041789 (+) 3120 WP_000820410.1 autotransporter adhesin Ag43 -
  EKH78_RS10030 (EKH78_10120) yeeR 2041910..2043442 (+) 1533 WP_001350525.1 protein YeeR -
  EKH78_RS10035 (EKH78_10125) radC 2043439..2043885 (+) 447 WP_000187523.1 RadC family protein Machinery gene
  EKH78_RS10040 (EKH78_10130) yeeT 2043948..2044169 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EKH78_RS10045 (EKH78_10135) cbeA 2044243..2044611 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EKH78_RS10050 (EKH78_10140) cbtA 2044700..2045074 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EKH78_RS10055 (EKH78_10145) yeeW 2045071..2045265 (+) 195 WP_000988600.1 DUF5983 family protein -
  EKH78_RS10060 (EKH78_10150) - 2045311..2045391 (+) 81 Protein_1993 hypothetical protein -
  EKH78_RS10065 (EKH78_10155) - 2045680..2045808 (-) 129 Protein_1994 transposase domain-containing protein -
  EKH78_RS10070 (EKH78_10160) - 2045880..2046062 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EKH78_RS10075 (EKH78_10165) tmaR 2046163..2046492 (-) 330 WP_000450409.1 DUF496 family protein -
  EKH78_RS10080 (EKH78_10170) yeeA 2046664..2047722 (-) 1059 WP_001200891.1 FUSC family protein -
  EKH78_RS10085 (EKH78_10175) sbmC 2047920..2048393 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16556.98 Da        Isoelectric Point: 7.6151

>NTDB_id=290402 EKH78_RS10035 WP_000187523.1 2043439..2043885(+) (radC) [Escherichia coli strain ATCC 98082]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=290402 EKH78_RS10035 WP_000187523.1 2043439..2043885(+) (radC) [Escherichia coli strain ATCC 98082]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P76362

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

76.351

0.419