Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VIBHAR_RS16300 Genome accession   NC_009783
Coordinates   3538094..3538612 (-) Length   172 a.a.
NCBI ID   WP_012128886.1    Uniprot ID   Q9Z5X1
Organism   Vibrio campbellii ATCC BAA-1116     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3533094..3543612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS16275 (VIBHAR_03479) rimM 3533150..3533698 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  VIBHAR_RS16280 (VIBHAR_03480) rpsP 3533726..3533974 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  VIBHAR_RS16285 (VIBHAR_03481) ffh 3534185..3535567 (-) 1383 WP_005462555.1 signal recognition particle protein -
  VIBHAR_RS16290 (VIBHAR_03482) - 3535781..3536575 (+) 795 WP_005426660.1 inner membrane protein YpjD -
  VIBHAR_RS16295 (VIBHAR_03483) - 3536731..3538005 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  VIBHAR_RS16300 (VIBHAR_03484) luxS 3538094..3538612 (-) 519 WP_012128886.1 S-ribosylhomocysteine lyase Regulator
  VIBHAR_RS16305 (VIBHAR_03485) - 3538702..3539307 (-) 606 WP_005438049.1 hypothetical protein -
  VIBHAR_RS16310 (VIBHAR_03486) gshA 3539327..3540895 (-) 1569 WP_012128888.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19142.91 Da        Isoelectric Point: 4.7297

>NTDB_id=29038 VIBHAR_RS16300 WP_012128886.1 3538094..3538612(-) (luxS) [Vibrio campbellii ATCC BAA-1116]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEVGVAVNKNDELA
LPESMLRELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=29038 VIBHAR_RS16300 WP_012128886.1 3538094..3538612(-) (luxS) [Vibrio campbellii ATCC BAA-1116]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCATTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGGTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGTGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAGAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9Z5X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment