Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CSC31_RS14925 Genome accession   NZ_CP029089
Coordinates   3144445..3145080 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain AR444     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3139445..3150080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC31_RS14895 (CSC31_3014) murB 3140543..3141562 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  CSC31_RS14900 (CSC31_3015) - 3141559..3142023 (-) 465 WP_003162492.1 low molecular weight protein-tyrosine-phosphatase -
  CSC31_RS14905 (CSC31_3016) kdsB 3142023..3142787 (-) 765 WP_003162491.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSC31_RS14910 (CSC31_3017) - 3142787..3142972 (-) 186 WP_003091157.1 Trm112 family protein -
  CSC31_RS14915 (CSC31_3018) lpxK 3143010..3144008 (-) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  CSC31_RS14920 (CSC31_3019) - 3144008..3144448 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  CSC31_RS14925 (CSC31_3020) exbB 3144445..3145080 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CSC31_RS14930 (CSC31_3021) comA 3145153..3147378 (-) 2226 WP_003162490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CSC31_RS14935 (CSC31_3022) - 3147509..3148042 (+) 534 WP_003162489.1 DUF2062 domain-containing protein -
  CSC31_RS14940 (CSC31_3023) - 3148315..3149340 (-) 1026 WP_033942962.1 IS110 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=290367 CSC31_RS14925 WP_003091163.1 3144445..3145080(-) (exbB) [Pseudomonas aeruginosa strain AR444]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=290367 CSC31_RS14925 WP_003091163.1 3144445..3145080(-) (exbB) [Pseudomonas aeruginosa strain AR444]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment