Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | DK245_RS08055 | Genome accession | NZ_CP034595 |
| Coordinates | 1667787..1668233 (-) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli strain WCHEC035053S1G0 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1662787..1673233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK245_RS08005 (DK245_008005) | sbmC | 1663279..1663752 (+) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
| DK245_RS08010 (DK245_008010) | yeeA | 1663950..1665008 (+) | 1059 | WP_001200891.1 | FUSC family protein | - |
| DK245_RS08015 (DK245_008015) | tmaR | 1665180..1665509 (+) | 330 | WP_000450409.1 | DUF496 family protein | - |
| DK245_RS08020 (DK245_008020) | - | 1665610..1665792 (-) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| DK245_RS08025 (DK245_008025) | - | 1665864..1665992 (+) | 129 | Protein_1566 | transposase domain-containing protein | - |
| DK245_RS08030 (DK245_008030) | - | 1666281..1666361 (-) | 81 | Protein_1567 | hypothetical protein | - |
| DK245_RS08035 (DK245_008035) | yeeW | 1666407..1666601 (-) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| DK245_RS08040 (DK245_008040) | cbtA | 1666598..1666972 (-) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| DK245_RS08045 (DK245_008045) | cbeA | 1667061..1667429 (-) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| DK245_RS08050 (DK245_008050) | yeeT | 1667503..1667724 (-) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| DK245_RS08055 (DK245_008055) | radC | 1667787..1668233 (-) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| DK245_RS08060 (DK245_008060) | yeeR | 1668230..1669762 (-) | 1533 | WP_001350525.1 | protein YeeR | - |
| DK245_RS08065 (DK245_008065) | agn43 | 1669883..1673002 (-) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=290330 DK245_RS08055 WP_000187523.1 1667787..1668233(-) (radC) [Escherichia coli strain WCHEC035053S1G0]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=290330 DK245_RS08055 WP_000187523.1 1667787..1668233(-) (radC) [Escherichia coli strain WCHEC035053S1G0]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |