Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DK245_RS04550 Genome accession   NZ_CP034595
Coordinates   926007..926522 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WCHEC035053S1G0     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 921007..931522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK245_RS04505 (DK245_004505) csrA 921594..921779 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DK245_RS04535 (DK245_004535) yqaB 923237..923803 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DK245_RS04540 (DK245_004540) yqaA 923800..924228 (+) 429 WP_001287454.1 YqaA family protein -
  DK245_RS04545 (DK245_004545) gshA 924301..925857 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DK245_RS04550 (DK245_004550) luxS 926007..926522 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DK245_RS04555 (DK245_004555) emrB 926586..928124 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DK245_RS04560 (DK245_004560) emrA 928141..929313 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DK245_RS04565 (DK245_004565) emrR 929440..929970 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DK245_RS04570 (DK245_004570) ygaH 930061..930396 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  DK245_RS04575 (DK245_004575) ygaZ 930386..931123 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=290318 DK245_RS04550 WP_001130211.1 926007..926522(+) (luxS) [Escherichia coli strain WCHEC035053S1G0]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290318 DK245_RS04550 WP_001130211.1 926007..926522(+) (luxS) [Escherichia coli strain WCHEC035053S1G0]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731