Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VIBHAR_RS09945 Genome accession   NC_009783
Coordinates   2124366..2125787 (-) Length   473 a.a.
NCBI ID   WP_005528196.1    Uniprot ID   A7MVI1
Organism   Vibrio campbellii ATCC BAA-1116     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2119366..2130787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS09920 (VIBHAR_02114) - 2120042..2120692 (+) 651 WP_005533410.1 thiopurine S-methyltransferase -
  VIBHAR_RS09925 (VIBHAR_02115) purT 2120779..2121954 (-) 1176 WP_012127843.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VIBHAR_RS09930 (VIBHAR_02116) cdd 2122102..2122989 (-) 888 WP_012127844.1 cytidine deaminase -
  VIBHAR_RS09935 (VIBHAR_02117) - 2123254..2123931 (-) 678 WP_009705896.1 LrgB family protein -
  VIBHAR_RS09940 (VIBHAR_02118) - 2123933..2124307 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  VIBHAR_RS09945 (VIBHAR_02119) sbcB 2124366..2125787 (-) 1422 WP_005528196.1 exodeoxyribonuclease I Machinery gene
  VIBHAR_RS09950 (VIBHAR_02121) - 2125949..2126629 (-) 681 WP_005528198.1 DUF1826 domain-containing protein -
  VIBHAR_RS09955 (VIBHAR_02122) - 2126857..2128230 (-) 1374 WP_005528200.1 L-cystine transporter -
  VIBHAR_RS09960 (VIBHAR_02123) - 2128424..2129119 (-) 696 WP_012127846.1 NAD(P)H-binding protein -
  VIBHAR_RS09965 (VIBHAR_02124) - 2129784..2130396 (+) 613 Protein_1908 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54483.76 Da        Isoelectric Point: 4.9244

>NTDB_id=29029 VIBHAR_RS09945 WP_005528196.1 2124366..2125787(-) (sbcB) [Vibrio campbellii ATCC BAA-1116]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=29029 VIBHAR_RS09945 WP_005528196.1 2124366..2125787(-) (sbcB) [Vibrio campbellii ATCC BAA-1116]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7MVI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment