Detailed information NTG0290279

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EKM58_RS18010
• Genome accession: NZ_CP034589
• Coordinates: 3687159..3688151 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L37
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3682159..3693151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKM58_RS17990 (EKM58_17990)	otnK	3682934..3684196 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
EKM58_RS17995 (EKM58_17995)	ygbL	3684193..3684831 (+)	639	WP_001278994.1	aldolase	-
EKM58_RS18000 (EKM58_18000)	ygbM	3684836..3685612 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
EKM58_RS18005 (EKM58_18005)	ygbN	3685701..3687065 (+)	1365	WP_000104441.1	GntP family transporter	-
EKM58_RS18010 (EKM58_18010)	rpoS	3687159..3688151 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EKM58_RS18015 (EKM58_18015)	nlpD	3688214..3689308 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EKM58_RS18020 (EKM58_18020)	pcm	3689493..3690119 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EKM58_RS18025 (EKM58_18025)	surE	3690113..3690874 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EKM58_RS18030 (EKM58_18030)	truD	3690855..3691904 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
EKM58_RS18035 (EKM58_18035)	ispF	3691901..3692380 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EKM58_RS18040 (EKM58_18040)	ispD	3692380..3693090 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=290279 EKM58_RS18010 WP_000081550.1 3687159..3688151(-) (rpoS) [Escherichia coli strain L37]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=290279 EKM58_RS18010 WP_000081550.1 3687159..3688151(-) (rpoS) [Escherichia coli strain L37]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715