Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EKM58_RS17730 Genome accession   NZ_CP034589
Coordinates   3634817..3635332 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain L37     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629817..3640332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM58_RS17705 (EKM58_17705) ygaZ 3630216..3630953 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EKM58_RS17710 (EKM58_17710) ygaH 3630943..3631278 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  EKM58_RS17715 (EKM58_17715) emrR 3631369..3631899 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EKM58_RS17720 (EKM58_17720) emrA 3632026..3633198 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EKM58_RS17725 (EKM58_17725) emrB 3633215..3634753 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EKM58_RS17730 (EKM58_17730) luxS 3634817..3635332 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EKM58_RS17735 (EKM58_17735) gshA 3635482..3637038 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EKM58_RS17740 (EKM58_17740) yqaA 3637111..3637539 (-) 429 WP_001287454.1 YqaA family protein -
  EKM58_RS17745 (EKM58_17745) yqaB 3637536..3638102 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EKM58_RS17775 (EKM58_17775) csrA 3639560..3639745 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=290276 EKM58_RS17730 WP_001130211.1 3634817..3635332(-) (luxS) [Escherichia coli strain L37]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290276 EKM58_RS17730 WP_001130211.1 3634817..3635332(-) (luxS) [Escherichia coli strain L37]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731