Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EKM58_RS14540 Genome accession   NZ_CP034589
Coordinates   2943904..2945331 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain L37     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2938904..2950331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM58_RS14500 (EKM58_14500) yeeW 2939088..2939282 (+) 195 WP_000988599.1 DUF5983 family protein -
  EKM58_RS14505 (EKM58_14505) - 2939328..2939408 (+) 81 Protein_2824 hypothetical protein -
  EKM58_RS14510 (EKM58_14510) - 2939697..2939843 (-) 147 Protein_2825 transposase domain-containing protein -
  EKM58_RS14515 (EKM58_14515) - 2939897..2940079 (+) 183 WP_024193496.1 EutP/PduV family microcompartment system protein -
  EKM58_RS14520 (EKM58_14520) tmaR 2940180..2940509 (-) 330 WP_000450409.1 DUF496 family protein -
  EKM58_RS14525 (EKM58_14525) yeeA 2940681..2941739 (-) 1059 WP_001200905.1 FUSC family protein -
  EKM58_RS14530 (EKM58_14530) sbmC 2941937..2942410 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  EKM58_RS14535 (EKM58_14535) dacD 2942529..2943695 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EKM58_RS14540 (EKM58_14540) sbcB 2943904..2945331 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  EKM58_RS14545 (EKM58_14545) tsuB 2945374..2945601 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EKM58_RS14550 (EKM58_14550) tsuA 2945615..2946673 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  EKM58_RS14555 (EKM58_14555) plaP 2946852..2948210 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EKM58_RS14560 (EKM58_14560) yoeI 2948200..2948262 (-) 63 WP_010723108.1 membrane protein YoeI -
  EKM58_RS14565 (EKM58_14565) yeeY 2948477..2949406 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  EKM58_RS14570 (EKM58_14570) yeeZ 2949452..2950276 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=290267 EKM58_RS14540 WP_000980570.1 2943904..2945331(+) (sbcB) [Escherichia coli strain L37]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=290267 EKM58_RS14540 WP_000980570.1 2943904..2945331(+) (sbcB) [Escherichia coli strain L37]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581