Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EKM58_RS06245 Genome accession   NZ_CP034589
Coordinates   1297587..1298192 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain L37     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292587..1303192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKM58_RS06215 (EKM58_06215) rsmS 1293292..1293453 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  EKM58_RS06220 (EKM58_06220) priC 1293467..1293994 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  EKM58_RS06225 (EKM58_06225) ybaN 1294064..1294441 (+) 378 WP_001188905.1 DUF454 family protein -
  EKM58_RS06230 (EKM58_06230) apt 1294594..1295145 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EKM58_RS06235 (EKM58_06235) dnaX 1295274..1297205 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EKM58_RS06240 (EKM58_06240) ybaB 1297258..1297587 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EKM58_RS06245 (EKM58_06245) recR 1297587..1298192 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EKM58_RS06250 (EKM58_06250) htpG 1298302..1300176 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EKM58_RS06255 (EKM58_06255) adk 1300357..1301001 (+) 645 WP_001220233.1 adenylate kinase -
  EKM58_RS06260 (EKM58_06260) hemH 1301237..1302199 (+) 963 WP_001250088.1 ferrochelatase -
  EKM58_RS06265 (EKM58_06265) aes 1302196..1303155 (-) 960 WP_063501955.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=290247 EKM58_RS06245 WP_001195025.1 1297587..1298192(+) (recR) [Escherichia coli strain L37]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=290247 EKM58_RS06245 WP_001195025.1 1297587..1298192(+) (recR) [Escherichia coli strain L37]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment