Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CSC49_RS11815 Genome accession   NZ_CP029084
Coordinates   2316373..2316819 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR464     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2311373..2321819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC49_RS11785 (CSC49_2198) gcvPA 2312299..2313645 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CSC49_RS11790 (CSC49_2199) gcvT 2313665..2314756 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  CSC49_RS11795 (CSC49_2200) - 2314915..2315439 (-) 525 WP_001015120.1 shikimate kinase -
  CSC49_RS11800 - 2315429..2315575 (-) 147 WP_001789879.1 hypothetical protein -
  CSC49_RS11805 (CSC49_2201) comGF 2315672..2316169 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  CSC49_RS11810 (CSC49_2202) comGE 2316087..2316386 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  CSC49_RS11815 (CSC49_2203) comGD 2316373..2316819 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  CSC49_RS11820 (CSC49_2204) comGC 2316797..2317108 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  CSC49_RS11825 (CSC49_2205) comGB 2317122..2318192 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  CSC49_RS11830 (CSC49_2206) comGA 2318164..2319138 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  CSC49_RS11835 (CSC49_2207) - 2319190..2319813 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  CSC49_RS11840 (CSC49_2208) - 2319810..2320139 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CSC49_RS11845 (CSC49_2209) - 2320139..2321125 (-) 987 WP_000161307.1 ROK family glucokinase -
  CSC49_RS11850 - 2321122..2321325 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=290223 CSC49_RS11815 WP_001796473.1 2316373..2316819(-) (comGD) [Staphylococcus aureus strain AR464]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=290223 CSC49_RS11815 WP_001796473.1 2316373..2316819(-) (comGD) [Staphylococcus aureus strain AR464]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment