Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   EJ992_RS16850 Genome accession   NZ_CP034569
Coordinates   3224474..3225625 (-) Length   383 a.a.
NCBI ID   WP_227616443.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 14580     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3219474..3230625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ992_RS16815 (EJ992_16815) - 3219727..3220203 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  EJ992_RS16820 (EJ992_16820) - 3220203..3220487 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  EJ992_RS16825 (EJ992_16825) mnhG 3220471..3220845 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  EJ992_RS16830 (EJ992_16830) - 3220885..3221274 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  EJ992_RS16835 (EJ992_16835) comA 3221291..3221929 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  EJ992_RS16840 (EJ992_16840) - 3222016..3223203 (-) 1188 Protein_3272 sensor histidine kinase -
  EJ992_RS16850 (EJ992_16850) comP 3224474..3225625 (-) 1152 WP_227616443.1 PDZ domain-containing protein Regulator
  EJ992_RS16855 (EJ992_16855) comX 3225665..3225829 (-) 165 WP_011198251.1 competence pheromone ComX -
  EJ992_RS16860 (EJ992_16860) comQ 3225844..3226713 (-) 870 WP_011198252.1 polyprenyl synthetase family protein Regulator
  EJ992_RS16865 (EJ992_16865) degQ 3226902..3227042 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  EJ992_RS16875 (EJ992_16875) - 3227528..3227875 (+) 348 WP_009329512.1 hypothetical protein -
  EJ992_RS16880 (EJ992_16880) - 3227918..3229138 (-) 1221 WP_003184864.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43902.09 Da        Isoelectric Point: 7.7674

>NTDB_id=290190 EJ992_RS16850 WP_227616443.1 3224474..3225625(-) (comP) [Bacillus licheniformis strain ATCC 14580]
MRVNYNKLSLIIILLSLSLVPYIIYVNLHSSYLGMTMQFNEKNEYQVFEIEKGSLAQSLGFKKGDVILEINGKSVEKLRA
DDGKLADELSDVKSMIVERDGEIGFVETGYELVSYESLFLFIIPMMFYLLSLFCVYFIIKSNKRLNSASAFILIVFLLVT
STAYSCSVGSAKGDSLSIYITMITFQFVPVLYLHYIYQYFKEKGKEFFNNKIFLFLYPVGLLNLLLEISSDNLQISYSSI
KLFNLVSFLVVTIIAFALIIYGVIKNKASEQAYFLRILVITNFVAFIPFLIFYVIPYVFIGDYIFPAMFVVPFLLIIPFS
LVYQFIATKIYDIEFLLGRFKYYGLLAILPSLTAVGVFTLTQELSNSLNTVKNTIFIYLERPK

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=290190 EJ992_RS16850 WP_227616443.1 3224474..3225625(-) (comP) [Bacillus licheniformis strain ATCC 14580]
ATGCGTGTTAATTATAATAAACTATCTTTAATTATTATTTTGCTAAGCCTCTCCTTGGTTCCTTATATTATCTATGTAAA
TCTGCATTCTAGTTACCTTGGAATGACAATGCAATTTAATGAAAAAAACGAATACCAAGTATTCGAGATTGAAAAAGGGT
CACTGGCTCAATCCCTAGGATTTAAAAAAGGGGATGTTATTCTAGAGATAAATGGTAAAAGTGTAGAAAAATTAAGGGCT
GATGATGGGAAATTAGCTGATGAATTAAGTGATGTTAAATCGATGATCGTTGAAAGAGATGGAGAGATAGGGTTTGTAGA
GACCGGATATGAATTGGTGAGTTATGAAAGTCTATTTCTATTTATTATTCCAATGATGTTTTATCTCCTTTCTCTTTTTT
GTGTTTATTTCATAATAAAATCAAACAAAAGATTAAATTCGGCTTCAGCTTTTATTTTAATTGTTTTTCTGCTTGTTACA
TCAACAGCTTATTCTTGTTCTGTGGGATCTGCAAAGGGAGATAGTTTAAGTATCTATATAACAATGATAACTTTTCAATT
CGTTCCTGTTTTGTATCTCCACTATATTTATCAATATTTCAAGGAAAAAGGAAAAGAGTTTTTCAATAATAAAATATTTC
TTTTCCTATACCCTGTGGGTTTATTGAATTTGCTATTGGAAATTTCCAGTGATAATTTGCAGATTTCTTATAGTTCCATT
AAGCTCTTTAACCTGGTATCTTTCTTGGTTGTTACCATTATAGCCTTTGCTCTTATCATTTATGGTGTAATAAAAAATAA
AGCTTCTGAGCAAGCCTATTTTTTAAGGATACTTGTTATCACAAATTTTGTTGCGTTTATTCCGTTCTTAATTTTCTATG
TCATTCCATATGTATTTATCGGTGATTATATATTCCCGGCAATGTTTGTTGTACCCTTTTTGTTGATTATTCCTTTCTCA
TTAGTGTATCAATTTATTGCTACCAAAATATATGACATTGAATTCTTATTGGGACGTTTTAAATACTATGGATTGTTAGC
CATTTTACCAAGCTTGACAGCTGTAGGTGTATTTACTTTAACACAAGAATTAAGTAATAGTCTAAATACAGTTAAAAACA
CTATATTTATCTATTTGGAGAGACCCAAATAA

Domains


Predicted by InterProScan.

(31-82)

(35-103)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

37.903

97.128

0.368