Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EJ992_RS09370 Genome accession   NZ_CP034569
Coordinates   1825260..1825622 (+) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain ATCC 14580     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820260..1830622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ992_RS09340 (EJ992_09340) flgD 1821104..1821571 (+) 468 WP_003181782.1 flagellar hook assembly protein FlgD -
  EJ992_RS09345 (EJ992_09345) flgG 1821599..1822390 (+) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  EJ992_RS09350 (EJ992_09350) - 1822433..1822648 (+) 216 WP_003181786.1 flagellar FlbD family protein -
  EJ992_RS09355 (EJ992_09355) fliL 1822645..1823076 (+) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  EJ992_RS09360 (EJ992_09360) fliM 1823112..1824110 (+) 999 WP_003181789.1 flagellar motor switch protein FliM -
  EJ992_RS09365 (EJ992_09365) fliY 1824100..1825233 (+) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  EJ992_RS09370 (EJ992_09370) pilH 1825260..1825622 (+) 363 WP_003181796.1 response regulator Machinery gene
  EJ992_RS09375 (EJ992_09375) fliZ 1825635..1826309 (+) 675 WP_009328513.1 flagella biosynthesis regulatory protein FliZ -
  EJ992_RS09380 (EJ992_09380) fliP 1826302..1826967 (+) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  EJ992_RS09385 (EJ992_09385) fliQ 1826983..1827252 (+) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  EJ992_RS09390 (EJ992_09390) fliR 1827260..1828036 (+) 777 WP_011197977.1 flagellar biosynthetic protein FliR -
  EJ992_RS09395 (EJ992_09395) flhB 1828036..1829115 (+) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=290138 EJ992_RS09370 WP_003181796.1 1825260..1825622(+) (pilH) [Bacillus licheniformis strain ATCC 14580]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=290138 EJ992_RS09370 WP_003181796.1 1825260..1825622(+) (pilH) [Bacillus licheniformis strain ATCC 14580]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375