Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   CSC51_RS02555 Genome accession   NZ_CP029080
Coordinates   490754..492115 (-) Length   453 a.a.
NCBI ID   WP_061544228.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR466     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 485754..497115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC51_RS02525 (CSC51_0435) - 486603..487001 (+) 399 WP_049437909.1 hypothetical protein -
  CSC51_RS02530 (CSC51_0436) - 487122..487343 (-) 222 WP_108703121.1 hypothetical protein -
  CSC51_RS02535 (CSC51_0437) - 487358..487861 (-) 504 WP_037559702.1 DUF1643 domain-containing protein -
  CSC51_RS02540 (CSC51_0438) - 487876..488187 (-) 312 WP_061544231.1 DUF960 family protein -
  CSC51_RS02545 (CSC51_0439) - 488274..488624 (-) 351 WP_061544230.1 SAUGI family uracil-DNA glycosylase inhibitor -
  CSC51_RS02550 (CSC51_0440) ccrB 489129..490757 (-) 1629 WP_061642462.1 recombinase family protein Machinery gene
  CSC51_RS02555 (CSC51_0441) ccrA 490754..492115 (-) 1362 WP_061544228.1 recombinase family protein Machinery gene
  CSC51_RS02560 (CSC51_0442) - 492326..494092 (-) 1767 WP_061544227.1 DUF927 domain-containing protein -
  CSC51_RS02565 (CSC51_0443) - 494092..494385 (-) 294 WP_046464617.1 hypothetical protein -
  CSC51_RS02570 (CSC51_0444) - 494556..496070 (-) 1515 WP_108703122.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 52936.78 Da        Isoelectric Point: 9.8297

>NTDB_id=290112 CSC51_RS02555 WP_061544228.1 490754..492115(-) (ccrA) [Staphylococcus aureus strain AR466]
MEKAIAYVRQSTLKQQSLATQKSLIIDTAKQHGWSNVTFYDDKKTGGHTKRSGYQKMVEVITSGECKVLCCYRLNRLHRN
FKNAIQFFEICKKHHVTIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTRNGIREKAKQGKLITTHAPFGYHYS
KGHFIVNAEEAPTIKAVYRWYLQGLGYKKISQKLDKDMNFISRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIINVDT
FEEAQERRIHKQHNRSNSRNKLKRRIKCPYCQSTLTNLTIKKEHRSLRYYVCPKNMNEAYHTCPFKGINAQMIETEVLNT
CKVYCGNQSFHDKLNETILKALKHQQMKHRQSHLTQEQLIEKLAQNQIDIETFKRLSAGFEREERYSNYSSNQIAETIRH
VVKDKLTLEIIAPLIDDITITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=290112 CSC51_RS02555 WP_061544228.1 490754..492115(-) (ccrA) [Staphylococcus aureus strain AR466]
ATGGAAAAAGCCATTGCTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCGACTCAGAAATCCCTCATTATAGA
CACTGCTAAGCAACATGGATGGTCCAATGTAACATTTTATGATGATAAAAAAACAGGTGGACATACAAAGCGTTCAGGCT
ATCAAAAAATGGTAGAAGTGATTACATCTGGAGAGTGTAAAGTATTATGTTGCTATCGGCTAAATCGGCTCCATCGTAAT
TTCAAAAATGCTATACAATTCTTTGAAATTTGTAAAAAGCATCACGTCACAATCATCAGTGTTAACGATGGATATTTTGA
TTTGTCTAAAGAGTTTGATTGCTTTCGCTTAAACATACTCATGAGTCTAGCAGAAATGGAATCGAACAACATCAGCGAAC
AAACACGAAATGGGATAAGAGAAAAAGCCAAACAAGGTAAGTTGATTACAACACACGCCCCTTTTGGTTATCACTACAGC
AAAGGTCACTTTATTGTAAATGCAGAAGAAGCACCGACAATCAAAGCCGTTTATCGTTGGTATTTACAAGGACTTGGTTA
CAAGAAAATTTCTCAAAAGCTGGATAAAGATATGAATTTTATTTCTCGTAAGCCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAACTATTGTGGTCGTGTCATTAATAAATATGGAACGTTTAATGATATCGTTCCACCTATTATTAATGTTGATACG
TTTGAGGAAGCACAAGAGCGTCGTATTCATAAACAACACAATCGATCCAATTCTAGAAATAAGTTAAAGCGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAACATCGTTCTCTACGTTACTATGTCTGTCCTA
AAAATATGAATGAAGCCTATCATACGTGTCCATTTAAAGGCATCAATGCGCAAATGATTGAAACAGAGGTCCTAAACACT
TGTAAAGTATACTGTGGCAATCAATCATTTCATGACAAATTAAATGAGACAATACTAAAAGCTCTAAAACACCAACAAAT
GAAACACAGACAATCACATCTAACACAAGAACAACTCATCGAAAAACTAGCACAAAATCAAATTGATATAGAAACATTTA
AACGGTTATCTGCTGGCTTTGAAAGAGAAGAACGTTACTCTAATTATTCATCCAATCAAATTGCTGAAACAATCCGTCAT
GTAGTCAAAGATAAATTGACATTAGAAATCATAGCACCTTTGATTGATGACATTACAATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAACAGTCCACTCAATATCGTTGAACAATCGCATTTAATAACTCCTGAAAGGAATGAAGTCATAT
GA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

55.305

97.792

0.541
  ccrA Staphylococcus aureus N315

52.37

97.792

0.512

Multiple sequence alignment