Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DDT10_RS19845 Genome accession   NZ_CP029071
Coordinates   387783..387947 (+) Length   54 a.a.
NCBI ID   WP_269195032.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 382783..392947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS19840 srfAB 384728..387718 (+) 2991 Protein_321 surfactin non-ribosomal peptide synthetase SrfAB -
  DDT10_RS19845 comS 387783..387947 (+) 165 WP_269195032.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6180.18 Da        Isoelectric Point: 12.0559

>NTDB_id=290076 DDT10_RS19845 WP_269195032.1 387783..387947(+) (comS) [Bacillus amyloliquefaciens strain ALB79]
MRARRNSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=290076 DDT10_RS19845 WP_269195032.1 387783..387947(+) (comS) [Bacillus amyloliquefaciens strain ALB79]
ATGAGAGCGAGGAGGAACAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment