Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EKH72_RS11405 Genome accession   NZ_CP034565
Coordinates   2208431..2209030 (-) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain D3112     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203431..2214030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH72_RS11380 - 2203536..2204195 (-) 660 WP_005397228.1 PAS domain-containing protein -
  EKH72_RS11385 - 2204224..2205501 (-) 1278 WP_129830316.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  EKH72_RS11390 - 2205517..2205897 (-) 381 WP_129830317.1 RidA family protein -
  EKH72_RS11395 - 2206215..2207474 (+) 1260 WP_165384506.1 aromatic amino acid transport family protein -
  EKH72_RS11400 aqpZ 2207681..2208379 (+) 699 WP_005460095.1 aquaporin Z -
  EKH72_RS11405 recR 2208431..2209030 (-) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  EKH72_RS11410 - 2209060..2209389 (-) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  EKH72_RS11415 dnaX 2209472..2211613 (-) 2142 WP_129830319.1 DNA polymerase III subunit gamma/tau -
  EKH72_RS11420 apt 2211622..2212167 (-) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  EKH72_RS11425 - 2212333..2212680 (-) 348 WP_228764098.1 YbaN family protein -
  EKH72_RS26910 - 2212753..2212884 (-) 132 WP_005380608.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=290055 EKH72_RS11405 WP_005460088.1 2208431..2209030(-) (recR) [Vibrio parahaemolyticus strain D3112]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=290055 EKH72_RS11405 WP_005460088.1 2208431..2209030(-) (recR) [Vibrio parahaemolyticus strain D3112]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432