Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DDT10_RS11785 Genome accession   NZ_CP029071
Coordinates   2454829..2455164 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2449829..2460164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS11765 (DDT10_11765) gcvT 2450435..2451535 (-) 1101 WP_053573200.1 glycine cleavage system aminomethyltransferase GcvT -
  DDT10_RS11770 (DDT10_11770) - 2451959..2453629 (+) 1671 WP_031378948.1 SNF2-related protein -
  DDT10_RS11775 (DDT10_11775) - 2453651..2454445 (+) 795 WP_007408330.1 YqhG family protein -
  DDT10_RS11780 (DDT10_11780) sinI 2454622..2454795 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  DDT10_RS11785 (DDT10_11785) sinR 2454829..2455164 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DDT10_RS11790 (DDT10_11790) - 2455212..2455997 (-) 786 WP_007408329.1 TasA family protein -
  DDT10_RS11795 (DDT10_11795) - 2456062..2456646 (-) 585 WP_015240205.1 signal peptidase I -
  DDT10_RS11800 (DDT10_11800) tapA 2456618..2457289 (-) 672 WP_053573199.1 amyloid fiber anchoring/assembly protein TapA -
  DDT10_RS11805 (DDT10_11805) - 2457548..2457877 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  DDT10_RS11810 (DDT10_11810) - 2457917..2458096 (-) 180 WP_003153093.1 YqzE family protein -
  DDT10_RS11815 (DDT10_11815) comGG 2458153..2458530 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  DDT10_RS11820 (DDT10_11820) comGF 2458531..2459031 (-) 501 WP_256052909.1 competence type IV pilus minor pilin ComGF -
  DDT10_RS11825 (DDT10_11825) comGE 2458940..2459254 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  DDT10_RS11830 (DDT10_11830) comGD 2459238..2459675 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  DDT10_RS11835 (DDT10_11835) comGC 2459665..2459973 (-) 309 WP_079979070.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=290040 DDT10_RS11785 WP_003153104.1 2454829..2455164(+) (sinR) [Bacillus amyloliquefaciens strain ALB79]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=290040 DDT10_RS11785 WP_003153104.1 2454829..2455164(+) (sinR) [Bacillus amyloliquefaciens strain ALB79]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment