Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DDT10_RS07325 Genome accession   NZ_CP029071
Coordinates   1411643..1411927 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1406643..1416927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS07300 (DDT10_07300) - 1407886..1408794 (+) 909 WP_015417384.1 ketopantoate reductase family protein -
  DDT10_RS07305 (DDT10_07305) - 1408826..1410058 (-) 1233 WP_007409644.1 aminopeptidase -
  DDT10_RS07310 (DDT10_07310) - 1410159..1410293 (-) 135 WP_003154559.1 protein YkpC -
  DDT10_RS07315 (DDT10_07315) mreBH 1410365..1411372 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DDT10_RS07325 (DDT10_07325) abrB 1411643..1411927 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DDT10_RS07330 (DDT10_07330) - 1412100..1413404 (+) 1305 WP_007409646.1 ATP-binding protein -
  DDT10_RS07335 (DDT10_07335) - 1413406..1414233 (+) 828 WP_015417386.1 gamma-glutamylcyclotransferase family protein -
  DDT10_RS07340 (DDT10_07340) ktrC 1414274..1414939 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DDT10_RS07345 (DDT10_07345) ade 1415088..1416821 (+) 1734 WP_053573394.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=290030 DDT10_RS07325 WP_003154557.1 1411643..1411927(+) (abrB) [Bacillus amyloliquefaciens strain ALB79]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=290030 DDT10_RS07325 WP_003154557.1 1411643..1411927(+) (abrB) [Bacillus amyloliquefaciens strain ALB79]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment