Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DDT10_RS07110 Genome accession   NZ_CP029071
Coordinates   1375269..1375733 (-) Length   154 a.a.
NCBI ID   WP_015417366.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1370269..1380733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS07090 (DDT10_07090) - 1370750..1372570 (+) 1821 WP_113971599.1 PAS domain-containing protein -
  DDT10_RS07095 (DDT10_07095) - 1372595..1373764 (-) 1170 WP_015417364.1 aminotransferase A -
  DDT10_RS19765 - 1373965..1374126 (-) 162 WP_007409608.1 hypothetical protein -
  DDT10_RS07105 (DDT10_07105) cheV 1374315..1375226 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  DDT10_RS07110 (DDT10_07110) kre 1375269..1375733 (-) 465 WP_015417366.1 YkyB family protein Regulator
  DDT10_RS07115 (DDT10_07115) - 1375856..1377148 (-) 1293 WP_015239757.1 MFS transporter -
  DDT10_RS07120 (DDT10_07120) - 1377224..1377718 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  DDT10_RS07125 (DDT10_07125) - 1377793..1378656 (-) 864 WP_015417367.1 metallophosphoesterase -
  DDT10_RS07130 (DDT10_07130) fadH 1378801..1379565 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  DDT10_RS07135 (DDT10_07135) - 1379679..1380227 (+) 549 WP_053573390.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.62 Da        Isoelectric Point: 10.5281

>NTDB_id=290028 DDT10_RS07110 WP_015417366.1 1375269..1375733(-) (kre) [Bacillus amyloliquefaciens strain ALB79]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAAKRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=290028 DDT10_RS07110 WP_015417366.1 1375269..1375733(-) (kre) [Bacillus amyloliquefaciens strain ALB79]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAAAAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.208

100

0.922

Multiple sequence alignment