Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DDT10_RS05340 Genome accession   NZ_CP029071
Coordinates   1050960..1051538 (+) Length   192 a.a.
NCBI ID   WP_040238322.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1045960..1056538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS05320 (DDT10_05320) - 1046461..1047753 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  DDT10_RS05325 (DDT10_05325) - 1047875..1049398 (-) 1524 WP_053573540.1 FAD-dependent oxidoreductase -
  DDT10_RS05330 (DDT10_05330) - 1049523..1050380 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  DDT10_RS05335 (DDT10_05335) - 1050411..1050644 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  DDT10_RS05340 (DDT10_05340) comK 1050960..1051538 (+) 579 WP_040238322.1 competence protein ComK Regulator
  DDT10_RS05345 (DDT10_05345) - 1051683..1052051 (+) 369 WP_012117235.1 iron chaperone -
  DDT10_RS05350 (DDT10_05350) - 1052078..1052449 (+) 372 WP_053573541.1 iron chaperone -
  DDT10_RS05355 (DDT10_05355) - 1052572..1053081 (+) 510 WP_015417169.1 mep operon protein MepB -
  DDT10_RS05360 (DDT10_05360) - 1053310..1054020 (-) 711 WP_053573542.1 YrpD family protein -
  DDT10_RS05365 (DDT10_05365) - 1054216..1054485 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  DDT10_RS05370 (DDT10_05370) - 1054518..1054835 (-) 318 WP_003155166.1 YbjQ family protein -
  DDT10_RS05375 (DDT10_05375) - 1054877..1056346 (-) 1470 WP_053573543.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22327.63 Da        Isoelectric Point: 8.1419

>NTDB_id=290017 DDT10_RS05340 WP_040238322.1 1050960..1051538(+) (comK) [Bacillus amyloliquefaciens strain ALB79]
MCQKIHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=290017 DDT10_RS05340 WP_040238322.1 1050960..1051538(+) (comK) [Bacillus amyloliquefaciens strain ALB79]
ATGTGCCAGAAAATACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818

Multiple sequence alignment