Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DDT10_RS04260 Genome accession   NZ_CP029071
Coordinates   859177..859968 (+) Length   263 a.a.
NCBI ID   WP_053573608.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 854177..864968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS04235 (DDT10_04235) - 856171..857055 (+) 885 WP_053573606.1 PhzF family phenazine biosynthesis isomerase -
  DDT10_RS04240 (DDT10_04240) - 857132..857716 (+) 585 WP_053573607.1 nitroreductase -
  DDT10_RS04245 (DDT10_04245) - 857756..857947 (-) 192 WP_003155508.1 YfhD family protein -
  DDT10_RS04250 (DDT10_04250) - 858018..858128 (-) 111 WP_003155504.1 YfhE family protein -
  DDT10_RS04255 (DDT10_04255) - 858186..859085 (-) 900 WP_039252291.1 TIGR01777 family oxidoreductase -
  DDT10_RS04260 (DDT10_04260) recX 859177..859968 (+) 792 WP_053573608.1 recombination regulator RecX Regulator
  DDT10_RS04265 (DDT10_04265) - 859975..860289 (+) 315 WP_007408553.1 YfhH family protein -
  DDT10_RS04270 (DDT10_04270) - 860434..861627 (+) 1194 WP_076983409.1 MFS transporter -
  DDT10_RS04275 (DDT10_04275) - 861667..862056 (-) 390 WP_053573609.1 DUF2606 family protein -
  DDT10_RS04280 (DDT10_04280) - 862019..862930 (-) 912 WP_053573610.1 serine protease -
  DDT10_RS04285 (DDT10_04285) - 863078..863230 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  DDT10_RS04290 (DDT10_04290) - 863354..863623 (+) 270 WP_003155492.1 YfhJ family protein -
  DDT10_RS04295 (DDT10_04295) - 863751..864278 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  DDT10_RS04300 (DDT10_04300) - 864364..864699 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30976.20 Da        Isoelectric Point: 6.0921

>NTDB_id=290012 DDT10_RS04260 WP_053573608.1 859177..859968(+) (recX) [Bacillus amyloliquefaciens strain ALB79]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIKQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=290012 DDT10_RS04260 WP_053573608.1 859177..859968(+) (recX) [Bacillus amyloliquefaciens strain ALB79]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAAACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAGGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.848

100

0.798

Multiple sequence alignment